From 021a3dcad747c7a82c041b82591750c1a41cc6e7 Mon Sep 17 00:00:00 2001
From: Shun Wang <shuonwang@gmail.com>
Date: Wed, 12 Feb 2025 14:47:38 +0800
Subject: [PATCH] bayesmeta: add new pkg

---
 BioArchLinux/r-bayesmeta/PKGBUILD   | 37 +++++++++++++++++++++++++++++
 BioArchLinux/r-bayesmeta/lilac.py   | 14 +++++++++++
 BioArchLinux/r-bayesmeta/lilac.yaml | 14 +++++++++++
 3 files changed, 65 insertions(+)
 create mode 100644 BioArchLinux/r-bayesmeta/PKGBUILD
 create mode 100644 BioArchLinux/r-bayesmeta/lilac.py
 create mode 100644 BioArchLinux/r-bayesmeta/lilac.yaml

diff --git a/BioArchLinux/r-bayesmeta/PKGBUILD b/BioArchLinux/r-bayesmeta/PKGBUILD
new file mode 100644
index 0000000000..38ecef841b
--- /dev/null
+++ b/BioArchLinux/r-bayesmeta/PKGBUILD
@@ -0,0 +1,37 @@
+# Maintainer: Shun Wang <shuonwang at gmail dot com>
+# Contributor: Shun Wang <shuonwang at gmail dot com>
+
+_pkgname=bayesmeta
+_pkgver=3.4
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Bayesian Random-Effects Meta-Analysis and Meta-Regression"
+arch=('x86_64')
+url="https://cran.r-project.org/package=$_pkgname"
+license=('GPL-2.0-or-later')
+depends=(
+  r-forestplot
+  r-metafor
+  r-mvtnorm
+  r-numDeriv
+)
+optdepends=(
+  r-compute.es
+  r-knitr
+  r-rmarkdown
+  r-r.rsp
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('9b3352a1d31cbe5feaf87267232d0d28')
+b2sums=('a8963d075d2cbf78823aadd3b6610d66fe8a49863ed0bf6927865b35456e0282f7f7db275da3194a6af479b6c3b89819fe520c3e4d06cb788a1e3d98f23b409b')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}
\ No newline at end of file
diff --git a/BioArchLinux/r-bayesmeta/lilac.py b/BioArchLinux/r-bayesmeta/lilac.py
new file mode 100644
index 0000000000..caa4902f46
--- /dev/null
+++ b/BioArchLinux/r-bayesmeta/lilac.py
@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    # update_aur_repo()
\ No newline at end of file
diff --git a/BioArchLinux/r-bayesmeta/lilac.yaml b/BioArchLinux/r-bayesmeta/lilac.yaml
new file mode 100644
index 0000000000..c616d96dc5
--- /dev/null
+++ b/BioArchLinux/r-bayesmeta/lilac.yaml
@@ -0,0 +1,14 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: shun2wang
+  email: shuonwang@gmail.com
+repo_depends:
+- r-forestplot
+- r-metafor
+- r-mvtnorm
+- r-numDeriv
+- source: rpkgs
+  pkgname: bayesmeta
+  repo: cran
+  md5: true
+- alias: r