fix depends and rebuild

BioArchLinux/r-mirlab/PKGBUILD

@@ -4,7 +4,7 @@ _pkgname=miRLAB
 _pkgver=1.28.0
 pkgname=r-${_pkgname,,}
 pkgver=1.28.0
-pkgrel=2
+pkgrel=3
 pkgdesc='Dry lab for exploring miRNA-mRNA relationships'
 arch=('any')
 url="https://bioconductor.org/packages/${_pkgname}"

BioArchLinux/r-mirlab/lilac.yaml

@@ -26,4 +26,9 @@ update_on:
 - regex: miRLAB_([\d._-]+).tar.gz
   source: regex
   url: https://bioconductor.org/packages/miRLAB
+- source: manual
+  manual: 1
 - alias: r
+- alias: alpm-lilac
+  alpm: gsl
+  strip_release: true

BioArchLinux/r-recount3/PKGBUILD

@@ -4,7 +4,7 @@ _pkgname=recount3
 _pkgver=1.10.2
 pkgname=r-${_pkgname,,}
 pkgver=1.10.2
-pkgrel=1
+pkgrel=2
 pkgdesc='Explore and download data from the recount3 project'
 arch=('any')
 url="https://bioconductor.org/packages/${_pkgname}"
@@ -14,8 +14,8 @@ depends=(
   r-biocfilecache
   r-data.table
   r-genomicranges
+  r-httr
   r-r.utils
-  r-rcurl
   r-rtracklayer
   r-s4vectors
   r-sessioninfo

BioArchLinux/r-recount3/lilac.yaml

@@ -6,8 +6,8 @@ repo_depends:
 - r-biocfilecache
 - r-data.table
 - r-genomicranges
+- r-httr
 - r-r.utils
-- r-rcurl
 - r-rtracklayer
 - r-s4vectors
 - r-sessioninfo

BioArchLinux/r-rms/PKGBUILD

@@ -4,7 +4,7 @@ _pkgname=rms
 _pkgver=6.7-0
 pkgname=r-${_pkgname,,}
 pkgver=6.7.0
-pkgrel=1
+pkgrel=2
 pkgdesc='Regression Modeling Strategies'
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"
@@ -17,7 +17,6 @@ depends=(
   r-hmisc
   r-htmltable
   r-htmltools
-  r-kableextra
   r-knitr
   r-multcomp
   r-polspline
@@ -26,6 +25,7 @@ depends=(
 )
 optdepends=(
   r-boot
+  r-kableextra
   r-lattice
   r-mice
   r-nnet

BioArchLinux/r-rms/lilac.yaml

@@ -9,7 +9,6 @@ repo_depends:
 - r-hmisc
 - r-htmltable
 - r-htmltools
-- r-kableextra
 - r-knitr
 - r-multcomp
 - r-polspline