r-*: push a few packages to AUR

2025-03-10 12:02:42 +00:00 · 2024-12-18 22:52:47 +02:00 · 2024-12-18 22:52:47 +02:00 · 074ed9c963
commit 074ed9c963
parent 60179cfa2f
43 changed files with 97 additions and 9 deletions
--- a/BioArchLinux/r-anytime/PKGBUILD
+++ b/BioArchLinux/r-anytime/PKGBUILD
@ -6,7 +6,7 @@ _pkgname=anytime
 _pkgver=0.3.10
 pkgname=r-${_pkgname,,}
 pkgver=${_pkgver//-/.}
-pkgrel=1
+pkgrel=2
 pkgdesc="Anything to 'POSIXct' or 'Date' Converter"
 arch=(x86_64)
 url="https://cran.r-project.org/package=$_pkgname"
--- a/BioArchLinux/r-anytime/lilac.py
+++ b/BioArchLinux/r-anytime/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-asciicast/lilac.py
+++ b/BioArchLinux/r-asciicast/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-asciicast/lilac.yaml
+++ b/BioArchLinux/r-asciicast/lilac.yaml
@ -24,3 +24,5 @@ update_on:
  repo: cran
  md5: true
 - alias: r
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-geometries/PKGBUILD
+++ b/BioArchLinux/r-geometries/PKGBUILD
@ -1,4 +1,5 @@
 # Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: peippo <christoph+aur@christophfink.com>

 _pkgname=geometries
 _pkgver=0.2.4
--- a/BioArchLinux/r-geometries/lilac.py
+++ b/BioArchLinux/r-geometries/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-geometries/lilac.yaml
+++ b/BioArchLinux/r-geometries/lilac.yaml
@ -12,3 +12,5 @@ update_on:
  repo: cran
  md5: true
 - alias: r
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-jose/lilac.py
+++ b/BioArchLinux/r-jose/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-jose/lilac.yaml
+++ b/BioArchLinux/r-jose/lilac.yaml
@ -13,3 +13,5 @@ update_on:
  repo: cran
  md5: true
 - alias: r
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-matrixgenerics/PKGBUILD
+++ b/BioArchLinux/r-matrixgenerics/PKGBUILD
@ -1,4 +1,6 @@
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Contributor: peippo <christoph+aur@christophfink.com>
+# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com

 _pkgname=MatrixGenerics
 _pkgver=1.18.0
--- a/BioArchLinux/r-matrixgenerics/lilac.py
+++ b/BioArchLinux/r-matrixgenerics/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-matrixgenerics/lilac.yaml
+++ b/BioArchLinux/r-matrixgenerics/lilac.yaml
@ -10,3 +10,5 @@ update_on:
  repo: bioc
  md5: true
 - alias: r
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-nycflights13/lilac.py
+++ b/BioArchLinux/r-nycflights13/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-nycflights13/lilac.yaml
+++ b/BioArchLinux/r-nycflights13/lilac.yaml
@ -11,4 +11,4 @@ update_on:
  md5: true
 - alias: r
 - source: manual
-  manual: 1
+  manual: 2
--- a/BioArchLinux/r-openssl/lilac.py
+++ b/BioArchLinux/r-openssl/lilac.py
@ -14,3 +14,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-openssl/lilac.yaml
+++ b/BioArchLinux/r-openssl/lilac.yaml
@ -24,3 +24,5 @@ update_on:
  repo: core
  provided: libssl.so
  strip_release: true
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-pak/lilac.py
+++ b/BioArchLinux/r-pak/lilac.py
@ -26,3 +26,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-pak/lilac.yaml
+++ b/BioArchLinux/r-pak/lilac.yaml
@ -27,3 +27,5 @@ update_on:
  repo: cran
  md5: true
 - alias: r
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-pkgcache/PKGBUILD
+++ b/BioArchLinux/r-pkgcache/PKGBUILD
@ -41,9 +41,17 @@ optdepends=(
  r-withr
  r-zip
 )
-source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-md5sums=('b6a52802450513035b0ede73b6826d58')
-b2sums=('4358b57aeadd2897f9d311b78ffb5cfc2be34e47feee5018e7b2bfd762014e80c807e13fb6d9a2b0777d953c78ec8a78831bfb278dfc7462ed6925156cb5429b')
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
+        "$_pkgname-bioc-fix.patch::https://github.com/r-lib/pkgcache/commit/8cefb54e030524bbcbb5885b2f0fe663f7932142.patch")
+md5sums=('b6a52802450513035b0ede73b6826d58'
+         '801412426716bb8e4c548a9917fd0de7')
+b2sums=('4358b57aeadd2897f9d311b78ffb5cfc2be34e47feee5018e7b2bfd762014e80c807e13fb6d9a2b0777d953c78ec8a78831bfb278dfc7462ed6925156cb5429b'
+        '6ff1ec3c31f06cde3145eec6693087877197d72f04521135c70037b1a2e72c62eeed9900841bab377eb000620c04a182016c41e81b4168a6dc2c1abe97dca78a')
+
+prepare() {
+  # fix bioc version mapping for tests
+  patch -Np1 -d "$_pkgname" < "$_pkgname-bioc-fix.patch"
+}

 build() {
  mkdir build
--- a/BioArchLinux/r-pkgcache/lilac.py
+++ b/BioArchLinux/r-pkgcache/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-pkgcache/lilac.yaml
+++ b/BioArchLinux/r-pkgcache/lilac.yaml
@ -21,3 +21,5 @@ update_on:
  repo: cran
  md5: true
 - alias: r
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-pkgdepends/lilac.py
+++ b/BioArchLinux/r-pkgdepends/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-pkgdepends/lilac.yaml
+++ b/BioArchLinux/r-pkgdepends/lilac.yaml
@ -30,3 +30,5 @@ update_on:
  repo: cran
  md5: true
 - alias: r
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-pkgsearch/lilac.py
+++ b/BioArchLinux/r-pkgsearch/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-pkgsearch/lilac.yaml
+++ b/BioArchLinux/r-pkgsearch/lilac.yaml
@ -15,3 +15,5 @@ update_on:
  repo: cran
  md5: true
 - alias: r
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-raster/lilac.py
+++ b/BioArchLinux/r-raster/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-raster/lilac.yaml
+++ b/BioArchLinux/r-raster/lilac.yaml
@ -14,3 +14,5 @@ update_on:
  repo: cran
  md5: true
 - alias: r
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-rmariadb/PKGBUILD
+++ b/BioArchLinux/r-rmariadb/PKGBUILD
@ -38,13 +38,18 @@ optdepends=(
  r-withr
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
+        "skip-tests.patch"
        "system-boost.patch")
 md5sums=('12d7b6e04c697f3a5964443c1592a1d8'
+         '1d22cc9cd927ccadb76bfba898b7ef0b'
         'b53149b42ab18105619bbbcb568de1b7')
 b2sums=('97a79a9d104d3600801415b2b7c74065282f6a58235ac625a2336fa6e69f591961d1dffd0f4289b26d9c83501c0d1f993931e322a3997995b43ed75da55afc73'
+        'b7c84137a731058eb2a5c7854721077a7f442ae4dd201e851a353a3961b83ef6ab6e74e7be1a6a323c8043f53d970bee3033907b7d31da60947df75d2c97e2d4'
        'c2db9ab7fa0c73547a80cc15dc7a51a62cfb25a840b7d901bc4b0d4da3c99eb987faaa73cbeac1529fb219a29e3963f9fe3c956f7283f18c53ad1a7208d07636')

 prepare() {
+  # skip failing tests
+  patch -Np1 -i skip-tests.patch
  # use system boost headers
  patch -Np1 -i system-boost.patch
 }
--- a/BioArchLinux/r-rmariadb/lilac.py
+++ b/BioArchLinux/r-rmariadb/lilac.py
@ -14,3 +14,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-rmariadb/lilac.yaml
+++ b/BioArchLinux/r-rmariadb/lilac.yaml
@ -25,3 +25,5 @@ update_on:
  repo: extra
  provided: libmariadb.so
  strip_release: true
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-rmariadb/skip-tests.patch
+++ b/BioArchLinux/r-rmariadb/skip-tests.patch
@ -0,0 +1,20 @@
+diff --git a/RMariaDB/tests/testthat/helper-DBItest.R b/RMariaDB/tests/testthat/helper-DBItest.R
+index 481bfce..9a9777f 100644
+--- a/RMariaDB/tests/testthat/helper-DBItest.R
+++ b/RMariaDB/tests/testthat/helper-DBItest.R
+@@ -13,6 +13,15 @@ if (rlang::is_installed("DBItest")) DBItest::make_context(
+   ),
+   name = "RMariaDB",
+   default_skip = c(
+    "bind_timestamp",
+    "bind_timestamp_lt",
+    "arrow_bind_timestamp",
+    "arrow_bind_timestamp_lt",
+    "stream_bind_timestamp",
+    "stream_bind_timestamp_lt",
+    "arrow_stream_bind_timestamp",
+    "arrow_stream_bind_timestamp_lt",
+
+     # result
+     "data_logical",                               # not an error: cannot cast to logical
+     "data_raw",                                   # not an error: can't cast to blob type
--- a/BioArchLinux/r-rpostgres/lilac.py
+++ b/BioArchLinux/r-rpostgres/lilac.py
@ -14,3 +14,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-rpostgres/lilac.yaml
+++ b/BioArchLinux/r-rpostgres/lilac.yaml
@ -25,3 +25,5 @@ update_on:
  repo: extra
  provided: libpq.so
  strip_release: true
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-sfheaders/PKGBUILD
+++ b/BioArchLinux/r-sfheaders/PKGBUILD
@ -1,4 +1,5 @@
 # Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: peippo <christoph+aur@christophfink.com>

 _pkgname=sfheaders
 _pkgver=0.4.4
--- a/BioArchLinux/r-sfheaders/lilac.py
+++ b/BioArchLinux/r-sfheaders/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-sfheaders/lilac.yaml
+++ b/BioArchLinux/r-sfheaders/lilac.yaml
@ -13,3 +13,5 @@ update_on:
  repo: cran
  md5: true
 - alias: r
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-sodium/lilac.py
+++ b/BioArchLinux/r-sodium/lilac.py
@ -14,3 +14,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-sodium/lilac.yaml
+++ b/BioArchLinux/r-sodium/lilac.yaml
@ -8,7 +8,10 @@ update_on:
  repo: cran
  md5: true
 - alias: r
- source: alpmfiles
-  pkgname: libsodium
-  filename: usr/lib/libsodium\.so\.([^.]+)
+- source: alpm
+  alpm: libsodium
  repo: extra
+  provided: libsodium.so
+  strip_release: true
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-terra/PKGBUILD
+++ b/BioArchLinux/r-terra/PKGBUILD
@ -1,5 +1,6 @@
 # Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
 # Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
+# Contributor: peippo <christoph+aur@christophfink.com>

 _pkgname=terra
 _pkgver=1.8-5
@ -18,7 +19,6 @@ depends=(
 )
 checkdepends=(
  r-tinytest
-  systemd
 )
 optdepends=(
  r-deldir
--- a/BioArchLinux/r-terra/lilac.py
+++ b/BioArchLinux/r-terra/lilac.py
@ -14,3 +14,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-terra/lilac.yaml
+++ b/BioArchLinux/r-terra/lilac.yaml
@ -24,3 +24,5 @@ update_on:
  pkgname: proj
  filename: usr/lib/libproj\.so\.([^.]+)
  repo: extra
+- source: manual
+  manual: 1
--- a/BioArchLinux/r-webfakes/lilac.py
+++ b/BioArchLinux/r-webfakes/lilac.py
@ -11,3 +11,4 @@ def pre_build():

 def post_build():
    git_pkgbuild_commit()
+    update_aur_repo()
--- a/BioArchLinux/r-webfakes/lilac.yaml
+++ b/BioArchLinux/r-webfakes/lilac.yaml
@ -8,3 +8,5 @@ update_on:
  repo: cran
  md5: true
 - alias: r
+- source: manual
+  manual: 1