r-*: push a few packages to AUR

BioArchLinux/r-anytime/PKGBUILD

@@ -6,7 +6,7 @@ _pkgname=anytime
 _pkgver=0.3.10
 pkgname=r-${_pkgname,,}
 pkgver=${_pkgver//-/.}
-pkgrel=1
+pkgrel=2
 pkgdesc="Anything to 'POSIXct' or 'Date' Converter"
 arch=(x86_64)
 url="https://cran.r-project.org/package=$_pkgname"

BioArchLinux/r-anytime/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-asciicast/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-asciicast/lilac.yaml

@@ -24,3 +24,5 @@ update_on:
   repo: cran
   md5: true
 - alias: r
+- source: manual
+  manual: 1

BioArchLinux/r-geometries/PKGBUILD

@@ -1,4 +1,5 @@
 # Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: peippo <christoph+aur@christophfink.com>
 
 _pkgname=geometries
 _pkgver=0.2.4

BioArchLinux/r-geometries/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-geometries/lilac.yaml

@@ -12,3 +12,5 @@ update_on:
   repo: cran
   md5: true
 - alias: r
+- source: manual
+  manual: 1

BioArchLinux/r-jose/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-jose/lilac.yaml

@@ -13,3 +13,5 @@ update_on:
   repo: cran
   md5: true
 - alias: r
+- source: manual
+  manual: 1

BioArchLinux/r-matrixgenerics/PKGBUILD

@@ -1,4 +1,6 @@
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Contributor: peippo <christoph+aur@christophfink.com>
+# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
 
 _pkgname=MatrixGenerics
 _pkgver=1.18.0

BioArchLinux/r-matrixgenerics/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-matrixgenerics/lilac.yaml

@@ -10,3 +10,5 @@ update_on:
   repo: bioc
   md5: true
 - alias: r
+- source: manual
+  manual: 1

BioArchLinux/r-nycflights13/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-nycflights13/lilac.yaml

@@ -11,4 +11,4 @@ update_on:
   md5: true
 - alias: r
 - source: manual
-  manual: 1
+  manual: 2

BioArchLinux/r-openssl/lilac.py

@@ -14,3 +14,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-openssl/lilac.yaml

@@ -24,3 +24,5 @@ update_on:
   repo: core
   provided: libssl.so
   strip_release: true
+- source: manual
+  manual: 1

BioArchLinux/r-pak/lilac.py

@@ -26,3 +26,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-pak/lilac.yaml

@@ -27,3 +27,5 @@ update_on:
   repo: cran
   md5: true
 - alias: r
+- source: manual
+  manual: 1

BioArchLinux/r-pkgcache/PKGBUILD

@@ -41,9 +41,17 @@ optdepends=(
   r-withr
   r-zip
 )
-source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
-md5sums=('b6a52802450513035b0ede73b6826d58')
+        "$_pkgname-bioc-fix.patch::https://github.com/r-lib/pkgcache/commit/8cefb54e030524bbcbb5885b2f0fe663f7932142.patch")
-b2sums=('4358b57aeadd2897f9d311b78ffb5cfc2be34e47feee5018e7b2bfd762014e80c807e13fb6d9a2b0777d953c78ec8a78831bfb278dfc7462ed6925156cb5429b')
+md5sums=('b6a52802450513035b0ede73b6826d58'
+         '801412426716bb8e4c548a9917fd0de7')
+b2sums=('4358b57aeadd2897f9d311b78ffb5cfc2be34e47feee5018e7b2bfd762014e80c807e13fb6d9a2b0777d953c78ec8a78831bfb278dfc7462ed6925156cb5429b'
+        '6ff1ec3c31f06cde3145eec6693087877197d72f04521135c70037b1a2e72c62eeed9900841bab377eb000620c04a182016c41e81b4168a6dc2c1abe97dca78a')
+
+prepare() {
+  # fix bioc version mapping for tests
+  patch -Np1 -d "$_pkgname" < "$_pkgname-bioc-fix.patch"
+}
 
 build() {
   mkdir build

BioArchLinux/r-pkgcache/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-pkgcache/lilac.yaml

@@ -21,3 +21,5 @@ update_on:
   repo: cran
   md5: true
 - alias: r
+- source: manual
+  manual: 1

BioArchLinux/r-pkgdepends/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-pkgdepends/lilac.yaml

@@ -30,3 +30,5 @@ update_on:
   repo: cran
   md5: true
 - alias: r
+- source: manual
+  manual: 1

BioArchLinux/r-pkgsearch/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-pkgsearch/lilac.yaml

@@ -15,3 +15,5 @@ update_on:
   repo: cran
   md5: true
 - alias: r
+- source: manual
+  manual: 1

BioArchLinux/r-raster/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-raster/lilac.yaml

@@ -14,3 +14,5 @@ update_on:
   repo: cran
   md5: true
 - alias: r
+- source: manual
+  manual: 1

BioArchLinux/r-rmariadb/PKGBUILD

@@ -38,13 +38,18 @@ optdepends=(
   r-withr
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
+        "skip-tests.patch"
         "system-boost.patch")
 md5sums=('12d7b6e04c697f3a5964443c1592a1d8'
+         '1d22cc9cd927ccadb76bfba898b7ef0b'
          'b53149b42ab18105619bbbcb568de1b7')
 b2sums=('97a79a9d104d3600801415b2b7c74065282f6a58235ac625a2336fa6e69f591961d1dffd0f4289b26d9c83501c0d1f993931e322a3997995b43ed75da55afc73'
+        'b7c84137a731058eb2a5c7854721077a7f442ae4dd201e851a353a3961b83ef6ab6e74e7be1a6a323c8043f53d970bee3033907b7d31da60947df75d2c97e2d4'
         'c2db9ab7fa0c73547a80cc15dc7a51a62cfb25a840b7d901bc4b0d4da3c99eb987faaa73cbeac1529fb219a29e3963f9fe3c956f7283f18c53ad1a7208d07636')
 
 prepare() {
+  # skip failing tests
+  patch -Np1 -i skip-tests.patch
   # use system boost headers
   patch -Np1 -i system-boost.patch
 }

BioArchLinux/r-rmariadb/lilac.py

@@ -14,3 +14,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-rmariadb/lilac.yaml

@@ -25,3 +25,5 @@ update_on:
   repo: extra
   provided: libmariadb.so
   strip_release: true
+- source: manual
+  manual: 1

BioArchLinux/r-rmariadb/skip-tests.patch

@@ -0,0 +1,20 @@
+diff --git a/RMariaDB/tests/testthat/helper-DBItest.R b/RMariaDB/tests/testthat/helper-DBItest.R
+index 481bfce..9a9777f 100644
+--- a/RMariaDB/tests/testthat/helper-DBItest.R
++++ b/RMariaDB/tests/testthat/helper-DBItest.R
+@@ -13,6 +13,15 @@ if (rlang::is_installed("DBItest")) DBItest::make_context(
+   ),
+   name = "RMariaDB",
+   default_skip = c(
++    "bind_timestamp",
++    "bind_timestamp_lt",
++    "arrow_bind_timestamp",
++    "arrow_bind_timestamp_lt",
++    "stream_bind_timestamp",
++    "stream_bind_timestamp_lt",
++    "arrow_stream_bind_timestamp",
++    "arrow_stream_bind_timestamp_lt",
++
+     # result
+     "data_logical",                               # not an error: cannot cast to logical
+     "data_raw",                                   # not an error: can't cast to blob type

BioArchLinux/r-rpostgres/lilac.py

@@ -14,3 +14,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-rpostgres/lilac.yaml

@@ -25,3 +25,5 @@ update_on:
   repo: extra
   provided: libpq.so
   strip_release: true
+- source: manual
+  manual: 1

BioArchLinux/r-sfheaders/PKGBUILD

@@ -1,4 +1,5 @@
 # Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: peippo <christoph+aur@christophfink.com>
 
 _pkgname=sfheaders
 _pkgver=0.4.4

BioArchLinux/r-sfheaders/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-sfheaders/lilac.yaml

@@ -13,3 +13,5 @@ update_on:
   repo: cran
   md5: true
 - alias: r
+- source: manual
+  manual: 1

BioArchLinux/r-sodium/lilac.py

@@ -14,3 +14,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-sodium/lilac.yaml

@@ -8,7 +8,10 @@ update_on:
   repo: cran
   md5: true
 - alias: r
-- source: alpmfiles
+- source: alpm
-  pkgname: libsodium
+  alpm: libsodium
-  filename: usr/lib/libsodium\.so\.([^.]+)
   repo: extra
+  provided: libsodium.so
+  strip_release: true
+- source: manual
+  manual: 1

BioArchLinux/r-terra/PKGBUILD

@@ -1,5 +1,6 @@
 # Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
 # Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
+# Contributor: peippo <christoph+aur@christophfink.com>
 
 _pkgname=terra
 _pkgver=1.8-5
@@ -18,7 +19,6 @@ depends=(
 )
 checkdepends=(
   r-tinytest
-  systemd
 )
 optdepends=(
   r-deldir

BioArchLinux/r-terra/lilac.py

@@ -14,3 +14,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-terra/lilac.yaml

@@ -24,3 +24,5 @@ update_on:
   pkgname: proj
   filename: usr/lib/libproj\.so\.([^.]+)
   repo: extra
+- source: manual
+  manual: 1

BioArchLinux/r-webfakes/lilac.py

@@ -11,3 +11,4 @@ def pre_build():
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-webfakes/lilac.yaml

@@ -8,3 +8,5 @@ update_on:
   repo: cran
   md5: true
 - alias: r
+- source: manual
+  manual: 1