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python-ncls: fix build for 0.0.68 release using PEP 518

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bipin kumar 2023-05-19 09:43:50 +05:30
parent 22adbf92bd
commit 0907763c83
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GPG key ID: C67233497C15E476
2 changed files with 21 additions and 22 deletions
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15
BioArchLinux/python-ncls/PKGBUILD
View file

@ -1,10 +1,10 @@
# Maintainer: bipin kumar <bipin@ccmb.res.in> # Maintainer: bipin kumar <kbipinkumar@pm.me>
pkgname=python-ncls pkgname=python-ncls
_module=${pkgname#python-} _module=${pkgname#python-}
pkgver=0.0.67 pkgver=0.0.68
pkgrel=3 pkgrel=1
pkgdesc="A wrapper for the nested containment list data structure" pkgdesc="A wrapper for the nested containment list data structure. http://dx.doi.org/10.1093/bioinformatics/btz615"
arch=('x86_64') arch=('x86_64')
url="https://github.com/biocore-ntnu/ncls" url="https://github.com/biocore-ntnu/ncls"
license=('BSD-2') license=('BSD-2')
@ -12,9 +12,10 @@ depends=(
'python' 'python'
'python-numpy' 'python-numpy'
'glibc' 'glibc'
'python-setuptools'
) )
makedepends=( makedepends=(
'python-setuptools' 'python-setuptools-scm'
'cython' 'cython'
'python-build' 'python-build'
'python-installer' 'python-installer'
@ -25,9 +26,9 @@ options=(!emptydirs)
source=("https://files.pythonhosted.org/packages/source/${_module::1}/$_module/$_module-$pkgver.tar.gz" source=("https://files.pythonhosted.org/packages/source/${_module::1}/$_module/$_module-$pkgver.tar.gz"
"LICENSE" "LICENSE"
"cython3.patch") "cython3.patch")
sha256sums=('fa3e673d60e97bb021a516287d74bb959870cf9d910ec82403b99c443d8f447e' sha256sums=('81aaa5abb123bb21797ed2f8ef921e20222db14a3ecbc61ccf447532f2b7ba93'
'48186409eb1721726d28884f40346a8380a893e95a50bef75584e2e9c2d4fcd5' '48186409eb1721726d28884f40346a8380a893e95a50bef75584e2e9c2d4fcd5'
'174a620d7dce0952e9e657ff40f25e73f0f5a9e38c96fffc91ccbc20805a7ee4') '80fbdf0c5c2a805c953df3c359d84e63bc801d14457ad5b8a6c140250ccec7d2')
prepare() { prepare() {
cp LICENSE "$_module-$pkgver" cp LICENSE "$_module-$pkgver"

28
BioArchLinux/python-ncls/cython3.patch
View file

@ -1,18 +1,16 @@
--- a/setup.py 2023-05-14 00:15:53.983680836 +0530 --- a/setup.py 2023-05-19 08:59:27.619223728 +0530
+++ b/setup.py 2023-05-14 00:17:57.185420794 +0530 +++ b/setup.py 2023-05-19 09:03:12.750132242 +0530
@@ -63,12 +63,14 @@ @@ -28,10 +28,12 @@
"ncls.src.fncls", ["ncls/src/fncls.pyx", "ncls/src/fintervaldb.c"], include_dirs=include_dirs,
# define_macros=macros, ),
include_dirs=include_dirs)] ]
+for e in extensions: +for e in extensions:
+ e.cython_directives = {'language_level': "3"} + e.cython_directives = {'language_level': "3"}
# using setuptools to cythonize if cython not found from Cython.Build import cythonize
# not recommended by cython docs, but still
try: -ext_modules = cythonize(extensions, language_level=2)
from Cython.Build import cythonize +ext_modules = cythonize(extensions, compiler_directives={'language_level' : "3"})
- ext_modules = cythonize(extensions, language_level=2)
+ ext_modules = cythonize(extensions, compiler_directives={'language_level' : "3"})
except ImportError: setup(ext_modules=ext_modules)
print()
print("Warning: Cannot compile with Cython. Using legacy build.")