r-tekrabber: init

BioArchLinux/r-tekrabber/PKGBUILD

@@ -0,0 +1,52 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=TEKRABber
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="An R package estimates the correlations of orthologs and transposable elements between two species"
+arch=(x86_64)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(LGPL3)
+depends=(
+  r-apeglm
+  r-biomart
+  r-deseq2
+  r-dplyr
+  r-magrittr
+  r-rcpp
+  r-scbn
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-bslib
+  r-ggplot2
+  r-ggpubr
+  r-knitr
+  r-plotly
+  r-rmarkdown
+  r-shiny
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('145026d8a5e02ec94f8a2a1f5405851e')
+sha256sums=('7495840995103b2303fb7d0f12440aa43e5d6d2e6e72e8fb9983c9f3da891950')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}

BioArchLinux/r-tekrabber/lilac.py

@@ -0,0 +1,17 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(
+        _G,
+        expect_license = "LGPL (>=3)",
+    )
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-tekrabber/lilac.yaml

@@ -0,0 +1,20 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-apeglm
+- r-biomart
+- r-deseq2
+- r-dplyr
+- r-magrittr
+- r-rcpp
+- r-scbn
+repo_makedepends:
+- r-testthat
+update_on:
+- source: rpkgs
+  pkgname: TEKRABber
+  repo: bioc
+  md5: true
+- alias: r