spread: rebuild from source

BioArchLinux/spread/PKGBUILD

@@ -2,23 +2,28 @@
 # Contributor: Malacology <guoyizhang at malacology dot net>
 
 pkgname=spread
+gitname=SPREADv1
 pkgver=1.0.7
 _pkgver=${pkgver//./-}
 pkgrel=5
-depends=(
-	'java-runtime'
-)
+depends=('java-runtime>=8')
+makedepends=('java-environment=8' 'ant' 'gendesk')
 pkgdesc="a user-friendly application to analyze and visualize phylogeographic reconstructions resulting from Bayesian inference of spatio-temporal diffusion. https://doi.org/10.1093/bioinformatics/btr481"
-arch=('x86_64')
-url="https://rega.kuleuven.be/cev/ecv/software/${pkgname}"
-license=('custom')
-source=("https://rega.kuleuven.be/cev/ecv/software/${pkgname}_files/${pkgname}-v${pkgver//./-}.jar" "${pkgname}.desktop")
-sha256sums=('2807406ba184d78d4d62adf2aa868f3b22b80719eb740085b13067183c907e71'
-            'a66b1681504a55e18926dd69cdcb8db13e6b76a9860b04c98cf2a881fd19aa09')
-
-package() {
-    install -dm755 "$pkgdir"/usr/share/{applications,${pkgname}}
-    install -m 755 ${srcdir}/*.desktop ${pkgdir}/usr/share/applications
-    install -m 755 ${srcdir}/icons/${pkgname}.png ${pkgdir}/usr/share/${pkgname}
-    install -m 755 ${srcdir}/${pkgname}-v${_pkgver}.jar ${pkgdir}/usr/share/${pkgname}/${pkgname}.jar
+arch=('any')
+url="https://github.com/phylogeography/$gitname"
+license=('LGPL')
+source=("$pkgname-$pkgver.tar.gz::$url/archive/refs/tags/${pkgver}.tar.gz")
+sha256sums=('bc59b28d645379b39e7f750ae1105c8e517284c85ddf591cde5eef9f1b1b4882')
+build() {
+    cd $gitname-$pkgver
+    ant jar
+    gendesk --pkgname "$bin" --pkgdesc "$pkgdesc" --exec="$pkgname" --icon="/usr/share/$pkgname/$pkgname.png"
+}
+package() {
+    cd $gitname-$pkgver
+    install -m 755 $pkgname.desktop ${pkgdir}/usr/share/applications/$pkgname.desktop
+    sed -i "s@\$SPREAD/lib@/usr/share/spread@g" release/Linux/scripts/$pkgname
+    install -m 755 release/Linux/scripts/$pkgname $pkgdir/usr/bin/$pkgname
+    install -m 755 release/Linux/icons/$pkgname.png ${pkgdir}/usr/share/${pkgname}
+    install -m 755 dist/$pkgname.jar ${pkgdir}/usr/share/${pkgname}/${pkgname}.jar
 }

BioArchLinux/spread/lilac.py

@@ -1,11 +0,0 @@
-#!/usr/bin/env python3
-from lilaclib import *
-
-def pre_build():
-    update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
-    run_cmd(['updpkgsums'])
-
-def post_build():
-    git_add_files('PKGBUILD')
-    git_commit()
-    update_aur_repo()

BioArchLinux/spread/lilac.yaml

@@ -2,7 +2,13 @@ build_prefix: extra-x86_64
 maintainers:
   - github: starsareintherose
     email: kuoi@bioarchlinux.org
+pre_build_script: |
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+post_build_script: |
+  git_pkgbuild_commit()
+  update_aur_repo()
 update_on:
-  - source: regex
-    url: "https://rega.kuleuven.be/cev/ecv/software/spread"
-    regex: 'SPREAD v(\d+.\d+.\d+).jar'
+  - source: github
+    github: phylogeography/SPREADv1
+    use_max_tag: true

BioArchLinux/spread/spread.desktop

@@ -1,19 +0,0 @@
-[Desktop Entry]
-Categories=
-Encoding=UTF-8
-Exec=java -jar /usr/share/spread/spread.jar
-GenericName=
-GenericName[zh]=
-Icon=/usr/share/spread/spread.png
-MimeType=
-Name=SPREAD
-Name[zh]=SPREAD
-ServiceTypes=
-SwallowExec=
-SwallowTitle=
-Terminal=false
-TerminalOptions=
-Type=Application
-X-KDE-SubstituteUID=false
-X-KDE-Username=root
-