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r-bionar: fix tests

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Pekka Ristola 2024-03-12 10:02:36 +02:00
parent 5688e192ad
commit 0fb7748c45
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GPG key ID: 2C20BE716E05213E
2 changed files with 39 additions and 5 deletions
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18
BioArchLinux/r-bionar/PKGBUILD
View file

@ -1,10 +1,10 @@
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> # Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=BioNAR _pkgname=BioNAR
_pkgver=1.4.1 _pkgver=1.4.4
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.} pkgver=${_pkgver//-/.}
pkgrel=1 pkgrel=0
pkgdesc="Biological Network Analysis in R" pkgdesc="Biological Network Analysis in R"
arch=(any) arch=(any)
url="https://bioconductor.org/packages/$_pkgname" url="https://bioconductor.org/packages/$_pkgname"
@ -50,9 +50,17 @@ optdepends=(
r-testthat r-testthat
r-vdiffr r-vdiffr
) )
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
md5sums=('cce2273d564095b70d5b18aa6d134612') "fix-tests.patch")
b2sums=('38bb15d26fa8dfa321e9ea801f949c39ac51189faf62aaa703e3ee2431261771e3485562f4b6ce6fe2311bbeec25875fd2b5a108911c84f16942805bb28752ae') md5sums=('60ea801489d5db3a2bb2e00d1acc1056'
'4a0d1366b4a7d786d07d1553c9a7899e')
b2sums=('9a2a1a98ccff8e9d8054295f5b53321dcd03f9d996a1931f4e6a51c98af378ac2d0e0ef9a1ff51e43b15ff795ac523305037197d6b0e63ddd2f4aeeb28f6ff34'
'5bcc25f82c45ce8442351f73a851f34bf2c76b286dd708141882f928876d02fba213e8760146cd3115d298985aa062fb67d9a5d89ea7a62687d65fdfb3349a84')
prepare() {
# fix test snapshots
patch -Np1 -i fix-tests.patch
}
build() { build() {
mkdir build mkdir build

26
BioArchLinux/r-bionar/fix-tests.patch Normal file
View file

@ -0,0 +1,26 @@
diff --git a/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg b/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg
index eacd23f..4feb787 100644
--- a/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg
+++ b/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg
@@ -18,7 +18,7 @@
</clipPath>
</defs>
<g clip-path='url(#cpMC4wMHw3MjAuMDB8MC4wMHw1NzYuMDA=)'>
-<rect x='0.00' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' />
+<rect x='0.000000000000064' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' />
</g>
<defs>
<clipPath id='cpNTQuOTF8NzE0LjUyfDIyLjc4fDUzMC4zMw=='>
diff --git a/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg b/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg
index de47e4c..7ef78e1 100644
--- a/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg
+++ b/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg
@@ -18,7 +18,7 @@
</clipPath>
</defs>
<g clip-path='url(#cpMC4wMHw3MjAuMDB8MC4wMHw1NzYuMDA=)'>
-<rect x='0.00' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' />
+<rect x='0.000000000000064' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' />
</g>
<defs>
<clipPath id='cpNTQuOTF8NzE0LjUyfDIyLjc4fDUzMC4zMw=='>