diff --git a/BioArchLinux/r-ggtreedendro/PKGBUILD b/BioArchLinux/r-ggtreedendro/PKGBUILD new file mode 100644 index 0000000000..ecb754bbb5 --- /dev/null +++ b/BioArchLinux/r-ggtreedendro/PKGBUILD @@ -0,0 +1,48 @@ +# Maintainer: Pekka Ristola + +_pkgname=ggtreeDendro +_pkgver=1.4.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Drawing 'dendrogram' using 'ggtree'" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(Artistic2.0) +depends=( + r-ggplot2 + r-ggtree + r-tidytree +) +checkdepends=( + r-testthat +) +optdepends=( + r-aplot + r-knitr + r-mdendro + r-prettydoc + r-pvclust + r-rmarkdown + r-testthat + r-treeio + r-yulab.utils +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('e5839d466e08665eb2475a99fb74e833') +sha256sums=('ace77cc34d998168e516ef377b563d49d9d8895135fdc6cdb9359544f6b2df3e') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} diff --git a/BioArchLinux/r-ggtreedendro/lilac.py b/BioArchLinux/r-ggtreedendro/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-ggtreedendro/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-ggtreedendro/lilac.yaml b/BioArchLinux/r-ggtreedendro/lilac.yaml new file mode 100644 index 0000000000..513ba32f59 --- /dev/null +++ b/BioArchLinux/r-ggtreedendro/lilac.yaml @@ -0,0 +1,16 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-ggplot2 +- r-ggtree +- r-tidytree +repo_makedepends: +- r-testthat +update_on: +- source: rpkgs + pkgname: ggtreeDendro + repo: bioc + md5: true +- alias: r