From 136c4c81727bda60308d362d27b19c4dd5de44c9 Mon Sep 17 00:00:00 2001
From: Kuoi <starsareintherose@outlook.com>
Date: Wed, 26 Apr 2023 00:36:48 +0800
Subject: [PATCH] aliview: compile from source

---
 BioArchLinux/aliview/PKGBUILD   | 39 +++++++++++++++++++++------------
 BioArchLinux/aliview/lilac.py   | 10 ---------
 BioArchLinux/aliview/lilac.yaml | 11 ++++++++--
 3 files changed, 34 insertions(+), 26 deletions(-)
 delete mode 100644 BioArchLinux/aliview/lilac.py

diff --git a/BioArchLinux/aliview/PKGBUILD b/BioArchLinux/aliview/PKGBUILD
index b100940a9d..df875bf32e 100644
--- a/BioArchLinux/aliview/PKGBUILD
+++ b/BioArchLinux/aliview/PKGBUILD
@@ -6,21 +6,32 @@ pkgdesc="Software for aligning viewing and editing dna/aminoacid sequences https
 arch=('any')
 url="http://www.ormbunkar.se/aliview/"
 license=('GPL')
-depends=('java-runtime')
-noextract=("$pkgname.jar")
-source=("http://www.ormbunkar.se/aliview/downloads/linux/linux-versions-all/linux-version-$pkgver/aliview/AliView.desktop"
-	"http://www.ormbunkar.se/aliview/downloads/linux/linux-versions-all/linux-version-$pkgver/aliview/$pkgname"
-	"http://www.ormbunkar.se/aliview/downloads/linux/linux-versions-all/linux-version-$pkgver/aliview/aliicon_128x128.png"
-	"http://www.ormbunkar.se/aliview/downloads/linux/linux-versions-all/linux-version-$pkgver/aliview/aliview.jar")
-sha256sums=('3f757d5d70e30dfbe948d16f7e748d4fc68041fd0293db97813cc0d129878aee'
-            '38f4fb4b81459e389262b6fb73eac69e7dd9b5f2716d5b8f65cd299fb5bd45b7'
-            'ad448539ff0fa5166644fd30cf8bf4069306e6bb6c6b0a8d05520fb2711f09d7'
-            '87fdf1e7fe5853625edcd9cc5556b898a27109890cecd99c8905f6cbdc10e3ff')
+depends=('java-runtime=8')
+makedepends=('maven' 'java-environment=8')
+source=("$pkgname.tar.gz::https://github.com/AliView/AliView/archive/refs/tags/v${pkgver}.tar.gz"
+	"$pkgname.patch::https://patch-diff.githubusercontent.com/raw/AliView/AliView/pull/123.patch"
+	"${pkgname}2.patch::https://github.com/AliView/AliView/pull/125.patch")
+sha256sums=('4af3459c6f29a002d8724c12b17d247673370c6fa10cb47adf55c18f57d9e139'
+            '16053c6d6cc9948aed439519d11230fa088a3e8850af63f840fab54f7fec0ed7'
+            '0452ddbbc2486c7632bf6f096215190a0bea2aae8c558da3fde8657a14f235bb')
+prepare(){
+  cd $srcdir/$_pkgname-$pkgver
+  patch -p1 < $srcdir/$pkgname.patch
+  patch -p1 < $srcdir/${pkgname}2.patch
+}
 
+build(){
+  cd $srcdir/$_pkgname-$pkgver
+  mvn package
+}
 
 package(){
-	install -Dm 755 $pkgname $pkgdir/usr/bin/$pkgname
-	install -Dm 644 $_pkgname.desktop $pkgdir/usr/share/applications/$_pkgname.desktop
-	install -Dm 755 aliicon_128x128.png $pkgdir/usr/share/$pkgname/aliicon_128x128.png
-       install -Dm 755 $pkgname.jar $pkgdir/usr/share/$pkgname/$pkgname.jar
+  cd $srcdir/$_pkgname-$pkgver
+  cd aliview-linux
+  install -Dm 755 $pkgname $pkgdir/usr/bin/$pkgname
+  install -Dm 644 $_pkgname.desktop $pkgdir/usr/share/applications/$_pkgname.desktop
+  install -Dm 755 aliicon_128x128.png $pkgdir/usr/share/$pkgname/aliicon_128x128.png
+  cd $srcdir/$_pkgname-$pkgver
+  cd target
+  install -Dm 755 $pkgname.jar $pkgdir/usr/share/$pkgname/$pkgname.jar
 }
diff --git a/BioArchLinux/aliview/lilac.py b/BioArchLinux/aliview/lilac.py
deleted file mode 100644
index fcbff72939..0000000000
--- a/BioArchLinux/aliview/lilac.py
+++ /dev/null
@@ -1,10 +0,0 @@
-#!/usr/bin/env python3
-from lilaclib import *
-
-def pre_build():
-    update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
-    run_cmd(['updpkgsums'])
-
-def post_build():
-    git_add_files('PKGBUILD')
-    git_commit()
diff --git a/BioArchLinux/aliview/lilac.yaml b/BioArchLinux/aliview/lilac.yaml
index a9c5afd68c..288881b68e 100644
--- a/BioArchLinux/aliview/lilac.yaml
+++ b/BioArchLinux/aliview/lilac.yaml
@@ -2,6 +2,13 @@ build_prefix: multilib
 maintainers:
   - github: starsareintherose
     email: kuoi@bioarchlinux.org
+pre_build_script: |
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+post_build_script: |
+  git_pkgbuild_commit()
 update_on:
-  - source: cmd
-    cmd: curl -sS http://www.ormbunkar.se/aliview/downloads/linux/linux-versions-all/ | grep 'linux-version' | sed 's/linux-version-/ /g' | sed 's/\/"/ /g' | awk '{print $6}' | tail -n 1
+  - source: github
+    github: AliView/AliView
+    use_max_tag: true
+    prefix: 'v'