From 14f3698664482182efcf5de9ff58e95d360e33e9 Mon Sep 17 00:00:00 2001
From: Pekka Ristola <pekkarr@protonmail.com>
Date: Tue, 5 Mar 2024 01:26:16 +0200
Subject: [PATCH] r-genepop: fix package

---
 BioArchLinux/r-genepop/PKGBUILD   | 31 +++++++++++++++++++------------
 BioArchLinux/r-genepop/lilac.py   |  5 ++++-
 BioArchLinux/r-genepop/lilac.yaml |  3 ++-
 3 files changed, 25 insertions(+), 14 deletions(-)

diff --git a/BioArchLinux/r-genepop/PKGBUILD b/BioArchLinux/r-genepop/PKGBUILD
index 22a32db88f..9f07492332 100644
--- a/BioArchLinux/r-genepop/PKGBUILD
+++ b/BioArchLinux/r-genepop/PKGBUILD
@@ -3,32 +3,39 @@
 _pkgname=genepop
 _pkgver=1.2.2
 pkgname=r-${_pkgname,,}
-pkgver=${_pkgver//[:-]/.}
+pkgver=${_pkgver//-/.}
 pkgrel=0
-pkgdesc='Population Genetic Data Analysis Using Genepop'
-arch=('x86_64')
-url="https://cran.r-project.org/package=${_pkgname}"
+pkgdesc="Population Genetic Data Analysis Using Genepop"
+arch=(x86_64)
+url="https://cran.r-project.org/package=$_pkgname"
 license=('CECILL-2.0')
 depends=(
-  r
   r-rcpp
-  r-rcppprogress
   r-stringr
 )
+makedepends=(
+  r-rcppprogress
+)
 optdepends=(
   r-knitr
   r-shiny
   r-testthat
 )
-source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('a')
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
+        "$_pkgname-LICENSE::http://www.cecill.info/licences/Licence_CeCILL_V2-en.txt")
+md5sums=('5fc72670d5c6237dfb373ec79f569bea'
+         '599cf91b33571e942d3ba5f9623b8011')
+b2sums=('4934ef20f980c277217c618667b19c5e73c47e3dec8b7201281c3c0eeb057a365fbc55b16115d338b69419568f64e8c34e6c58cc6950760ecf0e4d90c86e81d9'
+        'ff97dacc39b8597e670dbaf5bc0f0e4db73eada273708433fc227fa72c054a30a67dbc7b2416089d68f09ab65da721e5b30711022c41047d9cf706731d568038')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -Dm644 "$_pkgname-LICENSE" "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
 }
-# vim:set ts=2 sw=2 et:
diff --git a/BioArchLinux/r-genepop/lilac.py b/BioArchLinux/r-genepop/lilac.py
index b5cdb057c5..9de86aa0f5 100644
--- a/BioArchLinux/r-genepop/lilac.py
+++ b/BioArchLinux/r-genepop/lilac.py
@@ -7,7 +7,10 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
 from lilac_r_utils import r_pre_build
 
 def pre_build():
-    r_pre_build(_G)
+    r_pre_build(
+        _G,
+        expect_license = "CeCILL-2",
+    )
 
 def post_build():
     git_pkgbuild_commit()
diff --git a/BioArchLinux/r-genepop/lilac.yaml b/BioArchLinux/r-genepop/lilac.yaml
index ebfcd42535..b692d28c95 100644
--- a/BioArchLinux/r-genepop/lilac.yaml
+++ b/BioArchLinux/r-genepop/lilac.yaml
@@ -4,8 +4,9 @@ maintainers:
   email: kuoi@bioarchlinux.org
 repo_depends:
 - r-rcpp
-- r-rcppprogress
 - r-stringr
+repo_makedepends:
+- r-rcppprogress
 update_on:
 - source: rpkgs
   pkgname: genepop