agat: fix some depends

BioArchLinux/agat/PKGBUILD

@@ -16,11 +16,14 @@ depends=(
          'perl-file-sharedir'
          'perl-file-sharedir-install'
          'perl-graph'
+	 'perl-libwww'
          'perl-lwp-protocol-https'
          'perl-lwp-useragent-determined'
          'perl-moose'
          'perl-sort-naturally'
          'perl-yaml-libyaml'
+	 'perl-term-progressbar'
+	 'perl-list-moreutils'
         )
 source=($pkgname-$pkgver.tar.gz::https://github.com/NBISweden/AGAT/archive/refs/tags/v$pkgver.tar.gz)
 sha512sums=('ce619906ad77ece472e61e9be5837b5635a85fe98aadd88cf1c02350d6c45414caa959ec07b82f5522d8f273165808c91b40298aea6324be203248a2c2a02dab')

BioArchLinux/agat/lilac.yaml

@@ -16,6 +16,7 @@ repo_depends:
 - perl-module-runtime-conflicts 
 - perl-devel-overloadinfo
 - perl-bioperl
+- perl-term-progressbar
 update_on:
 - source: github
   github: NBISweden/AGAT

BioArchLinux/perl-term-progressbar/.SRCINFO

@@ -0,0 +1,22 @@
+# Generated by makepkg 6.0.2
+# Sun Mar  3 08:12:25 UTC 2024
+pkgbase = perl-term-progressbar
+	pkgdesc = provide a progress meter on a standard terminal
+	pkgver = 2.23
+	pkgrel = 1
+	url = https://metacpan.org/release/Term-ProgressBar
+	arch = any
+	license = PerlArtistic
+	license = GPL
+	checkdepends = perl-test-exception>=0.31
+	checkdepends = perl-test-warnings>=0
+	depends = perl-capture-tiny>=0.13
+	depends = perl-class-methodmaker>=1.02
+	depends = perl-term-readkey>=0
+	depends = perl>=5.006
+	options = !emptydirs
+	source = http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/Term-ProgressBar-2.23.tar.gz
+	md5sums = 3df5d0904dc93958262c25bcc4b5e5d8
+	sha512sums = 86c25446ea909554c206f531f4768a2fc3a9374839c8c307c3485abfe6cd49438452118addf92d85f58e4bca0e22f1ff44cac87a3ad1747a87e475e5f5f6e4d9
+
+pkgname = perl-term-progressbar

BioArchLinux/perl-term-progressbar/PKGBUILD

@@ -0,0 +1,50 @@
+# Contributor: Anonymous
+# Generator  : CPANPLUS::Dist::Arch 1.32
+
+pkgname='perl-term-progressbar'
+pkgver='2.23'
+pkgrel='1'
+pkgdesc="provide a progress meter on a standard terminal"
+arch=('any')
+license=('PerlArtistic' 'GPL')
+options=('!emptydirs')
+depends=('perl-capture-tiny>=0.13' 'perl-class-methodmaker>=1.02' 'perl-term-readkey>=0' 'perl>=5.006')
+makedepends=()
+checkdepends=('perl-test-exception>=0.31' 'perl-test-warnings>=0')
+url='https://metacpan.org/release/Term-ProgressBar'
+source=("http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/Term-ProgressBar-$pkgver.tar.gz")
+md5sums=('3df5d0904dc93958262c25bcc4b5e5d8')
+sha512sums=('86c25446ea909554c206f531f4768a2fc3a9374839c8c307c3485abfe6cd49438452118addf92d85f58e4bca0e22f1ff44cac87a3ad1747a87e475e5f5f6e4d9')
+_distdir="Term-ProgressBar-$pkgver"
+
+build() {
+  ( export PERL_MM_USE_DEFAULT=1 PERL5LIB=""                 \
+      PERL_AUTOINSTALL=--skipdeps                            \
+      PERL_MM_OPT="INSTALLDIRS=vendor DESTDIR='$pkgdir'"     \
+      PERL_MB_OPT="--installdirs vendor --destdir '$pkgdir'" \
+      MODULEBUILDRC=/dev/null
+
+    cd "$srcdir/$_distdir"
+    /usr/bin/perl Makefile.PL
+    make
+  )
+}
+
+check() {
+  cd "$srcdir/$_distdir"
+  ( export PERL_MM_USE_DEFAULT=1 PERL5LIB=""
+    make test
+  )
+}
+
+package() {
+  cd "$srcdir/$_distdir"
+  make install
+  find "$pkgdir" -name .packlist -o -name perllocal.pod -delete
+}
+
+# Local Variables:
+# mode: shell-script
+# sh-basic-offset: 2
+# End:
+# vim:set ts=2 sw=2 et:

BioArchLinux/perl-term-progressbar/lilac.yaml

@@ -0,0 +1,13 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: kuoi@bioarchlinux.org
+pre_build_script: |
+  update_pkgver_and_pkgrel(_G.newver)
+post_build_script: |
+  git_pkgbuild_commit()
+update_on:
+  - regex: Term-ProgressBar-(\d+.\d+)
+    source: regex
+    url: https://metacpan.org/dist/Term-ProgressBar
+  - alias: perl