diff --git a/BioArchLinux/r-correlation/PKGBUILD b/BioArchLinux/r-correlation/PKGBUILD new file mode 100644 index 0000000000..8dc9cddf91 --- /dev/null +++ b/BioArchLinux/r-correlation/PKGBUILD @@ -0,0 +1,57 @@ +# Maintainer: Pekka Ristola + +_pkgname=correlation +_pkgver=0.8.6 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Methods for Correlation Analysis" +arch=(any) +url="https://cran.r-project.org/package=$_pkgname" +license=('MIT') +depends=( + r-bayestestr + r-datawizard + r-insight + r-parameters +) +optdepends=( + r-bayesfactor + r-energy + r-ggplot2 + r-ggraph + r-gt + r-hmisc + r-knitr + r-lme4 + r-mbend + r-openxlsx2 + r-polycor + r-poorman + r-ppcor + r-psych + r-rmarkdown + r-rmcorr + r-rstanarm + r-see + r-testthat + r-tidygraph + r-wdm + r-wrs2 +) +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('fdd4bce864c73bd9d5f8a7725a8a906b') +b2sums=('f171ea2abe4842efeef30a0fb6af544053b1853f5d0d3553079f98bdc3470bafd63090a122d1f204e03c794b0276b32529737b83b4c65268b3875b758e1fdb84') + +build() { + mkdir build + R CMD INSTALL -l build "$_pkgname" +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} diff --git a/BioArchLinux/r-correlation/lilac.py b/BioArchLinux/r-correlation/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-correlation/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-correlation/lilac.yaml b/BioArchLinux/r-correlation/lilac.yaml new file mode 100644 index 0000000000..7b67e2003c --- /dev/null +++ b/BioArchLinux/r-correlation/lilac.yaml @@ -0,0 +1,15 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-bayestestr +- r-datawizard +- r-insight +- r-parameters +update_on: +- source: rpkgs + pkgname: correlation + repo: cran + md5: true +- alias: r diff --git a/BioArchLinux/r-ggstatsplot/PKGBUILD b/BioArchLinux/r-ggstatsplot/PKGBUILD new file mode 100644 index 0000000000..d2fbc0fd6e --- /dev/null +++ b/BioArchLinux/r-ggstatsplot/PKGBUILD @@ -0,0 +1,62 @@ +# Maintainer: Pekka Ristola + +_pkgname=ggstatsplot +_pkgver=0.13.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="'ggplot2' Based Plots with Statistical Details" +arch=(any) +url="https://cran.r-project.org/package=$_pkgname" +license=('GPL-3.0-only') +depends=( + r-correlation + r-datawizard + r-dplyr + r-ggcorrplot + r-ggplot2 + r-ggrepel + r-ggside + r-ggsignif + r-glue + r-insight + r-paletteer + r-parameters + r-patchwork + r-performance + r-purrr + r-rlang + r-statsexpressions + r-tidyr +) +optdepends=( + r-afex + r-bayesfactor + r-gapminder + r-knitr + r-lme4 + r-metabma + r-metafor + r-metaplus + r-psych + r-rmarkdown + r-rstantools + r-testthat + r-tibble + r-vdiffr + r-withr + r-wrs2 +) +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('207c703f6be2a0e9ae19f920a9b26135') +b2sums=('2beafe410bca06a266ea835c0aa9e4545161d1b8476268061fff4676659d679993c16b28afd47801ebb13c70cdf72b8f8bc21ba36b498d33a15e70f71e3d4fc0') + +build() { + mkdir build + R CMD INSTALL -l build "$_pkgname" +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} diff --git a/BioArchLinux/r-ggstatsplot/lilac.py b/BioArchLinux/r-ggstatsplot/lilac.py new file mode 100644 index 0000000000..b5d481821a --- /dev/null +++ b/BioArchLinux/r-ggstatsplot/lilac.py @@ -0,0 +1,17 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build( + _G, + expect_license = "GPL-3 | file LICENSE", + ) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-ggstatsplot/lilac.yaml b/BioArchLinux/r-ggstatsplot/lilac.yaml new file mode 100644 index 0000000000..d1aec3dab5 --- /dev/null +++ b/BioArchLinux/r-ggstatsplot/lilac.yaml @@ -0,0 +1,29 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-correlation +- r-datawizard +- r-dplyr +- r-ggcorrplot +- r-ggplot2 +- r-ggrepel +- r-ggside +- r-ggsignif +- r-glue +- r-insight +- r-paletteer +- r-parameters +- r-patchwork +- r-performance +- r-purrr +- r-rlang +- r-statsexpressions +- r-tidyr +update_on: +- source: rpkgs + pkgname: ggstatsplot + repo: cran + md5: true +- alias: r diff --git a/BioArchLinux/r-statsexpressions/PKGBUILD b/BioArchLinux/r-statsexpressions/PKGBUILD new file mode 100644 index 0000000000..9eb6f1493e --- /dev/null +++ b/BioArchLinux/r-statsexpressions/PKGBUILD @@ -0,0 +1,59 @@ +# Maintainer: Pekka Ristola + +_pkgname=statsExpressions +_pkgver=1.6.2 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Tidy Dataframes and Expressions with Statistical Details" +arch=(any) +url="https://cran.r-project.org/package=$_pkgname" +license=('MIT') +depends=( + r-afex + r-bayesfactor + r-bayestestr + r-correlation + r-datawizard + r-dplyr + r-effectsize + r-glue + r-insight + r-magrittr + r-parameters + r-performance + r-pmcmrplus + r-purrr + r-rlang + r-rstantools + r-tidyr + r-withr + r-wrs2 + r-zeallot +) +optdepends=( + r-ggplot2 + r-knitr + r-metabma + r-metafor + r-metaplus + r-patrick + r-rmarkdown + r-testthat +) +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('5dd904c3c2c04090a5dc35288289f352') +b2sums=('1bc230d98392eaf9b76e81d0c128a5211350b26b22cf071366c2211cd3b4ededc805522a728959b87acbe5f7315861e4725245117af6f8f426eaa875cdc8a2fe') + +build() { + mkdir build + R CMD INSTALL -l build "$_pkgname" +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} diff --git a/BioArchLinux/r-statsexpressions/lilac.py b/BioArchLinux/r-statsexpressions/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-statsexpressions/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-statsexpressions/lilac.yaml b/BioArchLinux/r-statsexpressions/lilac.yaml new file mode 100644 index 0000000000..77116bfd19 --- /dev/null +++ b/BioArchLinux/r-statsexpressions/lilac.yaml @@ -0,0 +1,31 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-afex +- r-bayesfactor +- r-bayestestr +- r-correlation +- r-datawizard +- r-dplyr +- r-effectsize +- r-glue +- r-insight +- r-magrittr +- r-parameters +- r-performance +- r-pmcmrplus +- r-purrr +- r-rlang +- r-rstantools +- r-tidyr +- r-withr +- r-wrs2 +- r-zeallot +update_on: +- source: rpkgs + pkgname: statsExpressions + repo: cran + md5: true +- alias: r diff --git a/BioArchLinux/r-wrs2/PKGBUILD b/BioArchLinux/r-wrs2/PKGBUILD new file mode 100644 index 0000000000..fabae561d9 --- /dev/null +++ b/BioArchLinux/r-wrs2/PKGBUILD @@ -0,0 +1,36 @@ +# Maintainer: Pekka Ristola + +_pkgname=WRS2 +_pkgver=1.1-6 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="A Collection of Robust Statistical Methods" +arch=(any) +url="https://cran.r-project.org/package=$_pkgname" +license=('GPL-3.0-only') +depends=( + r-plyr + r-reshape +) +optdepends=( + r-car + r-colorspace + r-ggally + r-ggplot2 + r-knitr + r-mediation +) +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('1d680b11b9cdc32bfd9ea886b0754904') +b2sums=('3c24050f90afa84677d2755e46c478dab6c3319a376ad8bb2fdbebc568cf449adecdc0cb2974b9390f70a1a7e64aa55aed9a9dba12155e902f879f24988604cc') + +build() { + mkdir build + R CMD INSTALL -l build "$_pkgname" +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} diff --git a/BioArchLinux/r-wrs2/lilac.py b/BioArchLinux/r-wrs2/lilac.py new file mode 100644 index 0000000000..39dc53390d --- /dev/null +++ b/BioArchLinux/r-wrs2/lilac.py @@ -0,0 +1,17 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build( + _G, + expect_needscompilation = True, + ) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-wrs2/lilac.yaml b/BioArchLinux/r-wrs2/lilac.yaml new file mode 100644 index 0000000000..13077f7892 --- /dev/null +++ b/BioArchLinux/r-wrs2/lilac.yaml @@ -0,0 +1,13 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-plyr +- r-reshape +update_on: +- source: rpkgs + pkgname: WRS2 + repo: cran + md5: true +- alias: r