From 17062a586d6fdd9f7157897ce028ac9485ef099b Mon Sep 17 00:00:00 2001
From: Kuoi <starsareintherose@outlook.com>
Date: Mon, 29 Aug 2022 02:50:26 +0100
Subject: [PATCH] examl: init

---
 BioArchLinux/examl/PKGBUILD   | 38 +++++++++++++++++++++++++++++++++++
 BioArchLinux/examl/lilac.py   | 12 +++++++++++
 BioArchLinux/examl/lilac.yaml |  9 +++++++++
 3 files changed, 59 insertions(+)
 create mode 100644 BioArchLinux/examl/PKGBUILD
 create mode 100644 BioArchLinux/examl/lilac.py
 create mode 100644 BioArchLinux/examl/lilac.yaml

diff --git a/BioArchLinux/examl/PKGBUILD b/BioArchLinux/examl/PKGBUILD
new file mode 100644
index 0000000000..3d91d3bd10
--- /dev/null
+++ b/BioArchLinux/examl/PKGBUILD
@@ -0,0 +1,38 @@
+pkgbase=examl
+pkgname=('examl' 'examl-mpi')
+_pkgname=ExaML
+pkgver=3.0.22
+pkgrel=1
+arch=('x86_64')
+url="https://github.com/stamatak/ExaML"
+makedepends=('make' 'gcc')
+license=('GPL')
+source=("$url/archive/refs/tags/v$pkgver.tar.gz")
+md5sums=('ad62d8c333cee316732c10f719c1e87c')
+
+build() {
+  cd "${_pkgname}-$pkgver"
+  cd $pkgname
+  make -f Makefile.AVX.gcc
+  make -f Makefile.OMP.AVX.gcc
+}
+
+package_examl() {
+pkgdesc="Exascale Maximum Likelihood https://doi.org/10.1093/bioinformatics/btv184"
+depends=('gcc-libs')
+
+  cd "${_pkgname}-$pkgver"
+  cd $pkgbase
+  install -Dm 755 $pkgbase-AVX $pkgdir/usr/bin/$pkgname
+}
+
+package_examl-mpi(){
+pkgdesc="Exascale Maximum Likelihood https://doi.org/10.1093/bioinformatics/btv184"
+depends=('gcc-libs' 'openmpi')
+
+  cd "${_pkgname}-$pkgver"
+  cd $pkgbase
+  install -Dm 755 $pkgbase-OMP-AVX $pkgdir/usr/bin/$pkgname
+}
+	
+
diff --git a/BioArchLinux/examl/lilac.py b/BioArchLinux/examl/lilac.py
new file mode 100644
index 0000000000..c6d1de3db7
--- /dev/null
+++ b/BioArchLinux/examl/lilac.py
@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()
+  update_aur_repo()
diff --git a/BioArchLinux/examl/lilac.yaml b/BioArchLinux/examl/lilac.yaml
new file mode 100644
index 0000000000..1981668b55
--- /dev/null
+++ b/BioArchLinux/examl/lilac.yaml
@@ -0,0 +1,9 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: kuoi@bioarchlinux.org
+update_on:
+  - source: github
+    github: stamatak/ExaML
+    use_max_tag: true
+    prefix: 'v'