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ipyrad: patch to remove future
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2 changed files with 9 additions and 2 deletions
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@ -6,7 +6,7 @@ arch=('any')
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url="https://github.com/dereneaton/ipyrad"
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license=('GPL-3.0-or-later')
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depends=('python' 'python-pandas' 'python-scipy' 'python-numpy' 'python-numba' 'python-h5py' 'python-ipyparallel' 'python-requests' 'python-mpi4py'
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'python-future' 'cutadapt' 'python-pysam' 'bedtools' 'vsearch' 'bwa' 'samtools' 'python-toyplot')
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'cutadapt' 'python-pysam' 'bedtools' 'vsearch' 'bwa' 'samtools' 'python-toyplot')
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optdepends=('jupyter-notebook: for interactive')
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makedepends=('python-build' 'python-installer' 'python-wheel' 'gcc' 'make')
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source=("https://github.com/dereneaton/ipyrad/archive/${pkgver}.tar.gz"
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@ -15,6 +15,14 @@ sha256sums=('8da9e03569ee1bc0e84bafefd1204249091602a9caa732a79511f67ba81d96b1'
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'c70c552231cd3289f1bad51c9bd174804c18bb3adcf47f501afec7a68f9c482e')
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provides=('muscle<5')
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conflicts=('muscle')
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prepare() {
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# fix future
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cd "${srcdir}/${pkgname}-${pkgver}"
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find . -name "*.py" -exec sed -i '/from __future__/d' {} +
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sed -i '/"future",/d' setup.py
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}
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build() {
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# muscle v3
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cd $srcdir
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@ -15,7 +15,6 @@ repo_depends:
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- bwa
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- samtools
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- python-toyplot
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- python-future
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update_on:
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- source: github
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github: dereneaton/ipyrad
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