bucky: init

BioArchLinux/bucky/PKGBUILD

@@ -0,0 +1,30 @@
+pkgname=bucky
+pkgver=1.4.4
+pkgrel=1
+pkgdesc="Bayesian Untangling of Concordance Knots https://doi.org/10.1093/bioinformatics/btq539"
+arch=('x86_64')
+conflicts=('mpi-bucky')
+url="https://github.com/tkchafin/mpi-bucky"
+license=('GPL')
+depends=('gcc-libs' 'boost-libs')
+makedepends=('clang' 'boost')
+source=("http://dstats.net/download/http://www.stat.wisc.edu/~ane/bucky/v${pkgver%.*}/bucky-${pkgver}.tgz")
+sha256sums=('1621fee0d42314d9aa45d0082b358d4531e7d1d1a0089c807c1b21fbdc4e4592')
+
+build() {
+  cd "$srcdir/$pkgname-$pkgver/src"
+  for file in TaxonSet Alias mbsumtree TGM Quartets mbsumtree
+do
+	clang++ -c $file.C
+done
+clang++ bucky.C TaxonSet.o Alias.o mbsumtree.o TGM.o Quartets.o -o bucky
+clang++ mbsum.C mbsumtree.o -o mbsum 
+}
+
+package() {
+  cd "$srcdir/$pkgname-$pkgver/src"
+for bin in bucky mbsum
+do
+  install -Dm 755 $bin $pkgdir/usr/bin/$bin
+done
+}

BioArchLinux/bucky/lilac.py

@@ -0,0 +1,11 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()

BioArchLinux/bucky/lilac.yaml

@@ -0,0 +1,12 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: kuoi@bioarchlinux.org
+pre_build: |
+    update_pkgrel()
+    vcs_update
+post_build: |
+    git_pkgbuild_commit()
+update_on:
+  - source: cmd
+    cmd: curl -sS https://pages.stat.wisc.edu/~ane/bucky/downloads.html | grep '<td>[0-9]\+' | sed 's/<td>//g' | awk '{print $1}' | head -n 1