From 28df37e5b3ec39bf0a59a11d308266eabc466ef3 Mon Sep 17 00:00:00 2001
From: Kuoi <starsareintherose@outlook.com>
Date: Sat, 28 May 2022 15:56:46 +0100
Subject: [PATCH] fix ggmsal depends

---
 BioArchLinux/r-ggmsa/PKGBUILD       |  3 ++-
 BioArchLinux/r-ggmsa/lilac.yaml     |  2 ++
 BioArchLinux/r-statebins/PKGBUILD   | 35 +++++++++++++++++++++++++++++
 BioArchLinux/r-statebins/lilac.py   | 12 ++++++++++
 BioArchLinux/r-statebins/lilac.yaml | 10 +++++++++
 5 files changed, 61 insertions(+), 1 deletion(-)
 create mode 100644 BioArchLinux/r-statebins/PKGBUILD
 create mode 100644 BioArchLinux/r-statebins/lilac.py
 create mode 100644 BioArchLinux/r-statebins/lilac.yaml

diff --git a/BioArchLinux/r-ggmsa/PKGBUILD b/BioArchLinux/r-ggmsa/PKGBUILD
index 01bd1a700f..2fbf742c9c 100644
--- a/BioArchLinux/r-ggmsa/PKGBUILD
+++ b/BioArchLinux/r-ggmsa/PKGBUILD
@@ -22,6 +22,8 @@ depends=(
   r-rcolorbrewer
   r-seqmagick
   r-tidyr
+  r-statebins
+  r-ggtree
 )
 optdepends=(
   r-ape
@@ -29,7 +31,6 @@ optdepends=(
   r-cowplot
   r-gggenes
   r-ggnewscale
-  r-ggtree
   r-ggtreeextra
   r-kableextra
   r-knitr
diff --git a/BioArchLinux/r-ggmsa/lilac.yaml b/BioArchLinux/r-ggmsa/lilac.yaml
index c9d60e0672..ba5f17d3ec 100644
--- a/BioArchLinux/r-ggmsa/lilac.yaml
+++ b/BioArchLinux/r-ggmsa/lilac.yaml
@@ -14,6 +14,8 @@ repo_depends:
 - r-rcolorbrewer
 - r-seqmagick
 - r-tidyr
+- r-statebins
+- r-ggtree
 update_on:
 - regex: ggmsa_([\d._-]+).tar.gz
   source: regex
diff --git a/BioArchLinux/r-statebins/PKGBUILD b/BioArchLinux/r-statebins/PKGBUILD
new file mode 100644
index 0000000000..429fd3d411
--- /dev/null
+++ b/BioArchLinux/r-statebins/PKGBUILD
@@ -0,0 +1,35 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=statebins
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Create United States Uniform Cartogram Heatmaps'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-ggplot2
+  r-scales
+)
+optdepends=(
+  r-covr
+  r-rcolorbrewer
+  r-tinytest
+  r-viridis
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et:
diff --git a/BioArchLinux/r-statebins/lilac.py b/BioArchLinux/r-statebins/lilac.py
new file mode 100644
index 0000000000..620556bc87
--- /dev/null
+++ b/BioArchLinux/r-statebins/lilac.py
@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()
diff --git a/BioArchLinux/r-statebins/lilac.yaml b/BioArchLinux/r-statebins/lilac.yaml
new file mode 100644
index 0000000000..88e97bcdc3
--- /dev/null
+++ b/BioArchLinux/r-statebins/lilac.yaml
@@ -0,0 +1,10 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: starsareintherose
+repo_depends:
+- r-ggplot2
+- r-scales
+update_on:
+- regex: statebins_([\d._-]+).tar.gz
+  source: regex
+  url: https://cran.r-project.org/package=statebins