r-tenxplore: basically fixed

BioArchLinux/r-restfulsedata/PKGBUILD

@@ -0,0 +1,34 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+
+_pkgname=restfulSEData
+_pkgver=1.18.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Example metadata for the "restfulSE" R package'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-delayedarray
+  r-experimenthub
+  r-hdf5array
+  r-summarizedexperiment
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('dd29ef22c993164ffe66e254fe721cf69ddc1ed86c28beaaf046d0b6e1d9b124')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-restfulsedata/lilac.yaml

@@ -0,0 +1,12 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+repo_depends:
+  - r-delayedarray
+  - r-experimenthub
+  - r-hdf5array
+  - r-summarizedexperiment
+update_on:
+  - regex: restfulSEData_([\d._-]+).tar.gz
+    source: regex
+    url: https://bioconductor.org/packages/restfulSEData

BioArchLinux/r-tenxplore/PKGBUILD

@@ -1,9 +1,9 @@
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=tenXplore
-_pkgver=1.16.0
+_pkgver=1.17.1
 pkgname=r-${_pkgname,,}
-pkgver=1.16.0
+pkgver=1.17.1
 pkgrel=1
 pkgdesc='ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics'
 arch=('any')
@@ -26,10 +26,17 @@ optdepends=(
   r-testthat
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('ecd462b5be4453b93ce368a2211d6c41ebf010d87a772dbdb8fb9bd39eca9f83')
+sha256sums=('6eb1cbc6cfb4abe26b56b222de74f288858d926a53ea16e4728511c25f041bcd')
+
+prepare(){
+  # Do not import RESTfulSummarizedExperiment from RESTfulSE
+  sed -i '/RESTfulSummarizedExperiment/d' ${_pkgname}/R/${_pkgname}.R ${_pkgname}/NAMESPACE
+  tar -zcvf ${_pkgname}_${_pkgver}_1.tar.gz  ${_pkgname}
+
+}
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  R CMD INSTALL ${_pkgname}_${_pkgver}_1.tar.gz -l "${srcdir}"
 }
 
 package() {

BioArchLinux/r-tenxplore/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()