diff --git a/BioArchLinux/r-rsubread/PKGBUILD b/BioArchLinux/r-rsubread/PKGBUILD index 13ebed4a9b..b0378de346 100644 --- a/BioArchLinux/r-rsubread/PKGBUILD +++ b/BioArchLinux/r-rsubread/PKGBUILD @@ -3,24 +3,26 @@ _pkgname=Rsubread _pkgver=2.16.0 pkgname=r-${_pkgname,,} -pkgver=2.16.0 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Mapping, quantification and variant analysis of sequencing data' -arch=('x86_64') -url="https://bioconductor.org/packages/${_pkgname}" -license=('GPL') +pkgdesc="Mapping, quantification and variant analysis of sequencing data" +arch=(x86_64) +url="https://bioconductor.org/packages/$_pkgname" +license=(GPL3) depends=( r + zlib ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('8d6cf3be423626b190a00f718c833cdc480fb7b37ab817dbc80940d60646182e') +md5sums=('317b014b1e15527a762636afb662dcca') +b2sums=('e97f5adef823e223a7011e924a06f2a7d611eab27322a90af545e313eb5d2e92f36f060f27671aa4a2bf1c7ae87fc1c09f6479fc6a2a6d030e540b5a54799e8b') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: diff --git a/BioArchLinux/r-rsubread/lilac.py b/BioArchLinux/r-rsubread/lilac.py index bd219c037c..e8e1284a30 100644 --- a/BioArchLinux/r-rsubread/lilac.py +++ b/BioArchLinux/r-rsubread/lilac.py @@ -1,12 +1,16 @@ #!/usr/bin/env python3 from lilaclib import * +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + def pre_build(): - for line in edit_file('PKGBUILD'): - if line.startswith('_pkgver='): - line = f'_pkgver={_G.newver}' - print(line) - update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.')) + r_pre_build( + _G, + expect_license = "GPL (>=3)", + ) def post_build(): git_pkgbuild_commit() diff --git a/BioArchLinux/r-rsubread/lilac.yaml b/BioArchLinux/r-rsubread/lilac.yaml index fed9535957..d615e669d4 100644 --- a/BioArchLinux/r-rsubread/lilac.yaml +++ b/BioArchLinux/r-rsubread/lilac.yaml @@ -3,7 +3,13 @@ maintainers: - github: starsareintherose email: kuoi@bioarchlinux.org update_on: -- regex: Rsubread_([\d._-]+).tar.gz - source: regex - url: https://bioconductor.org/packages/Rsubread +- source: rpkgs + pkgname: Rsubread + repo: bioc + md5: true - alias: r +- source: alpm + alpm: zlib + repo: core + provided: libz.so + strip_release: true