tracer: compile from soure and fix

BioArchLinux/tracer/PKGBUILD

@@ -1,23 +1,27 @@
-# Maintainer: Malacology <guoyizhang at malacology dot com>
-# Contributor: Malacology <guoyizhang at malacology dot com>
+# Maintainer: Malacology <guoyizhang at malacology dot net>
 
 pkgname=tracer
 _pkgname=Tracer
 pkgver=1.7.2
-pkgrel=6
+pkgrel=7
 pkgdesc="Posterior summarisation in Bayesian phylogenetics. https://doi.org/10.1093/sysbio/syy032"
 arch=('x86_64')
 url="https://github.com/beast-dev/tracer"
 license=('unknown')
-source=("https://github.com/beast-dev/tracer/releases/download/v${pkgver}/Tracer_v${pkgver}.tgz" "tracer.desktop")
-sha256sums=('b263e803377a9ae7b377e6637a6734907fb9908265c5451c628286fa87a6d5e2'
-            '07c099a1d34b4718d46e083b98cf9352e50d81ee6cb7346544cd9d1248f02ea8')
-depends=(
-	'java-runtime'
-)
-package() {
-    install -dm755 "$pkgdir"/usr/{bin,share/{${_pkgname},applications}}
-    install -m 755 ${srcdir}/tracer.desktop ${pkgdir}/usr/share/applications/tracer.desktop
-    mv ${srcdir}/* "${pkgdir}/usr/share/${_pkgname}"
-    ln -s /usr/share/Tracer/bin/tracer ${pkgdir}/usr/bin/tracer-beast
+source=("https://github.com/beast-dev/tracer/archive/refs/tags/v${pkgver}.tar.gz"
+	"tracer.desktop"
+	"tracer")
+sha256sums=('fd891e2244445fef71ab8010d8fab924abff2e5436e035bb335834e7c2e6d83b'
+            '07c099a1d34b4718d46e083b98cf9352e50d81ee6cb7346544cd9d1248f02ea8'
+            '6f88890e5e08a9280a966c29a4ca8678ec6dcbb445f2308c3845af3fb3615ff0')
+depends=('java-runtime=8')
+makedepends=('ant')
+build() {
+  cd $pkgname-$pkgver
+  ant dist
+}
+package() {
+  cd $pkgname-$pkgver
+  install -Dm 644 release/Linux/Tracer.png $pkgdir/usr/share/pixmaps/Tracer.png
+  install -Dm 755 build/dist/tracer.jar $pkgdir/usr/share/tracer/tracer.jar
 }

BioArchLinux/tracer/lilac.py

@@ -1,10 +0,0 @@
-#!/usr/bin/env python3
-
-from lilaclib import *
-
-def pre_build():
-  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
-
-def post_build():
-  git_add_files('PKGBUILD')
-  git_commit()

BioArchLinux/tracer/lilac.yaml

@@ -2,6 +2,12 @@ build_prefix: extra-x86_64
 maintainers:
   - github: starsareintherose
     email: kuoi@bioarchlinux.org
+pre_build_script: |
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+post_build_script: |
+  git_add_files('PKGBUILD')
+  git_commit()
 update_on:
   - source: github
     github: beast-dev/tracer

BioArchLinux/tracer/tracer

@@ -0,0 +1,2 @@
+#!/bin/bash
+java -Xms64m -Xmx10000m -jar /usr/share/tracer/tracer.jar $*