diff --git a/BioArchLinux/fastqc/PKGBUILD b/BioArchLinux/fastqc/PKGBUILD new file mode 100644 index 0000000000..82fcd483a1 --- /dev/null +++ b/BioArchLinux/fastqc/PKGBUILD @@ -0,0 +1,21 @@ +# Maintainer: Sedeer el-Showk + +pkgname=fastqc +pkgver=0.11.9 +pkgrel=1 +pkgdesc='A quality control tool for high throughput sequence data.' +arch=('any') +url="http://www.bioinformatics.babraham.ac.uk/projects/fastqc" +license=('GPL3') +depends=('perl' 'java-environment>=6' 'ttf-dejavu') +source=("http://www.bioinformatics.babraham.ac.uk/projects/$pkgname/${pkgname}_v$pkgver.zip") +md5sums=('ee7901b681bb2762d75d5a56c7ec6958') + +package() { + mkdir $pkgdir/opt/ + cp -r $srcdir/FastQC/ $pkgdir/opt/ + + mkdir -p "${pkgdir}/usr/bin/" + chmod 755 $pkgdir/opt/FastQC/fastqc + ln -s "/opt/FastQC/fastqc" "${pkgdir}/usr/bin/" +} diff --git a/BioArchLinux/fastqc/lilac.py b/BioArchLinux/fastqc/lilac.py new file mode 100755 index 0000000000..fcbff72939 --- /dev/null +++ b/BioArchLinux/fastqc/lilac.py @@ -0,0 +1,10 @@ +#!/usr/bin/env python3 +from lilaclib import * + +def pre_build(): + update_pkgver_and_pkgrel(_G.newver.lstrip('v')) + run_cmd(['updpkgsums']) + +def post_build(): + git_add_files('PKGBUILD') + git_commit() diff --git a/BioArchLinux/fastqc/lilac.yaml b/BioArchLinux/fastqc/lilac.yaml new file mode 100755 index 0000000000..4e4ace0614 --- /dev/null +++ b/BioArchLinux/fastqc/lilac.yaml @@ -0,0 +1,9 @@ +maintainers: + - github: starsareintherose + email: starsareintherose@outlook.com +build_prefix: extra-x86_64 +update_on: + - source: regex + url: "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/" + regex: 'Version (\d+.\d+.\d+) released' +time_limit_hours: 4