add bamtools

BioArchLinux/bamtools/PKGBUILD

@@ -0,0 +1,41 @@
+# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
+
+pkgname=bamtools
+pkgver=2.5.2
+pkgrel=1
+pkgdesc="C++ API & command-line toolkit for working with BAM data"
+arch=('x86_64' 'i686')
+url="https://github.com/pezmaster31/bamtools"
+license=('custom')
+depends=('gcc-libs' 'zlib')
+makedepends=('cmake')
+source=($pkgname-$pkgver.tar.gz::https://github.com/pezmaster31/bamtools/archive/v$pkgver.tar.gz)
+sha256sums=('4d8b84bd07b673d0ed41031348f10ca98dd6fa6a4460f9b9668d6f1d4084dfc8')
+
+prepare() {
+  cd $srcdir/$pkgname-$pkgver
+
+  sed -e '/set( CMAKE_BUILD_TYPE Release )/a set( CMAKE_CXX_FLAGS_RELEASE "-std=c++98 ${CMAKE_CXX_FLAGS_RELEASE}" )' \
+      -i CMakeLists.txt
+
+  mkdir -p build
+}
+
+build() {
+  cd $srcdir/$pkgname-$pkgver/build
+
+  cmake \
+    -DCMAKE_INSTALL_PREFIX=/usr \
+    -DCMAKE_BUILD_TYPE=Release \
+    ..
+
+  make
+}
+
+package() {
+  cd $srcdir/$pkgname-$pkgver/build
+
+  make DESTDIR=$pkgdir install
+
+  install -Dm644 ../LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
+}

BioArchLinux/bamtools/lilac.py

@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+    run_cmd(['updpkgsums'])
+
+def post_build():
+    git_add_files('PKGBUILD')
+    git_commit()

BioArchLinux/bamtools/lilac.yaml

@@ -0,0 +1,8 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: github
+    github: pezmaster31/bamtools
+    use_latest_release: true