add pamlx

BioArchLinux/pamlx/PKGBUILD

@@ -0,0 +1,29 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+pkgname=pamlx
+_pkgname=pamlX
+pkgver=1.3.1
+pkgrel=1
+pkgdesc="A Graphical User Interface for PAML https://doi.org/10.1093/molbev/mst179"
+arch=('x86_64')
+url="http://abacus.gene.ucl.ac.uk/software/"
+license=('custom')
+depends=('qt4' 'paml')
+makedepends=('make')
+provides=('pamlx')
+source=("http://abacus.gene.ucl.ac.uk/software/pamlX${pkgver}-src.tgz" "pamlX.desktop")
+sha256sums=('e6abbbc715aff1d9ebcb6d9b7c2fb494f916bee53f9cf807bf38cebc7bd625bf'
+            '4d46c866094df95b23d087acf402528326497308d2aeab0d8bd63f18a2f64550')
+build() {
+	cd $_pkgname$pkgver-src
+	qmake-qt4
+	make
+}
+
+package() {
+	mkdir -p $pkgdir/usr/{bin,share/{icons,applications}}
+	install -Dm 755 $_pkgname.desktop $pkgdir/usr/share/applications/$_pkgname.desktop
+	cd $_pkgname$pkgver-src
+	install -Dm 755 $_pkgname $pkgdir/usr/bin/$_pkgname
+	install -Dm755 pamlxlogo.png $pkgdir/usr/share/icons/$_pkgname.png
+}
+

BioArchLinux/pamlx/lilac.py

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+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+    run_cmd(['updpkgsums'])
+
+def post_build():
+    git_add_files('PKGBUILD')
+    git_commit()

BioArchLinux/pamlx/lilac.yaml

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+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: regex
+    url: http://abacus.gene.ucl.ac.uk/software/paml.html
+    regex: pamlX(\d+.\d+.\d+)-src.tgz
+repo_depends:
+  - paml

BioArchLinux/pamlx/pamlX.desktop

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+[Desktop Entry]
+Categories=
+Encoding=UTF-8
+Exec=pamlX
+GenericName=pamlX
+Icon=/usr/share/icons/pamlX.png
+MimeType=
+Name=pamlX
+ServiceTypes=
+SwallowExec=
+SwallowTitle=
+Terminal=false
+TerminalOptions=
+Type=Application
+X-KDE-SubstituteUID=false
+X-KDE-Username=root