Added phyx, renamed libarmadillo

BioArchLinux/libarmadillo/PKGBUILD

@@ -1,7 +1,8 @@
 # Maintainer:  Mick Elliot <m.g.elliot@rug.nl>
 # Contributor: Mick Elliot <m.g.elliot@rug.nl>
 
-pkgname=armadillo
+pkgname=libarmadillo
+_pkgname=armadillo
 sfname=arma
 pkgver=10.8.0
 pkgrel=1
@@ -13,18 +14,18 @@ depends=(openblas lapack)
 makedepends=(cmake)
 optdepends=()
 provides=()
-source=("http://sourceforge.net/projects/${sfname}/files/${pkgname}-${pkgver}.tar.xz")
+source=("http://sourceforge.net/projects/${sfname}/files/${_pkgname}-${pkgver}.tar.xz")
 
 sha256sums=('7c5d2fd4bba095733829f7fe03d4a74e732b81c75dd4d40001163487c967d5bc')
 
 build() {
-  cd "${pkgname}-${pkgver}"
+  cd "${_pkgname}-${pkgver}"
   cmake . -DCMAKE_INSTALL_PREFIX="/usr"
   make
 }
 
 package() {
-  cd "${pkgname}-${pkgver}"
+  cd "${_pkgname}-${pkgver}"
   make DESTDIR=${pkgdir} install 
   install -Dm644 LICENSE.txt "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
 }

BioArchLinux/phyx/PKGBUILD

@@ -0,0 +1,38 @@
+# Maintainer:  Mick Elliot <m.g.elliot@rug.nl>
+# Contributor: Mick Elliot <m.g.elliot@rug.nl>
+
+pkgname=phyx
+pkgver=1.3
+pkgrel=1
+pkgdesc="Command-line phylogenetic tools for unix. https://doi.org/10.1093/bioinformatics/btx063"
+arch=('x86_64')
+url="http://${sfname}.sourceforge.net/"
+license=('GPL')
+depends=(libarmadillo nlopt lapack)
+makedepends=(curl)
+optdepends=()
+provides=()
+source=("https://github.com/FePhyFoFum/${pkgname}/archive/refs/tags/v${pkgver}.tar.gz")
+
+sha256sums=('b09677f98f997838b39cd2724463be06d0627ddc90a7e659dc90d4e02db624eb')
+
+build() {
+  cd "${pkgname}-${pkgver}/src"
+  echo "Downloading config.guess and config.sub from gnu git site..."
+  curl 'https://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD' --output config.guess
+  curl 'https://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD' --output config.sub 
+  autoconf
+  ./configure
+  make
+}
+
+check() {
+  cd "${pkgname}-${pkgver}/src"
+  make check
+}
+
+package() {
+  cd "${pkgname}-${pkgver}/src"
+  make PREFIX=${pkgdir}/usr install 
+  install -Dm644 ../LICENSE "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}

BioArchLinux/phyx/lilac.py

@@ -0,0 +1,11 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()
+

BioArchLinux/phyx/lilac.yaml

@@ -0,0 +1,9 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: michael.g.elliot
+    email: m.g.elliot@rug.nl
+update_on:
+  - source: github
+    github: FePhyFoFum/phyx
+    use_max_tag: true
+