From 35234e514bdb244e82c170aff5111fc932d38722 Mon Sep 17 00:00:00 2001
From: Pekka Ristola <pekkarr@protonmail.com>
Date: Sat, 16 Mar 2024 00:46:57 +0200
Subject: [PATCH] r-gscreend: use latest sources

---
 BioArchLinux/r-gscreend/PKGBUILD   | 11 ++++++-----
 BioArchLinux/r-gscreend/lilac.yaml |  6 ++++--
 2 files changed, 10 insertions(+), 7 deletions(-)

diff --git a/BioArchLinux/r-gscreend/PKGBUILD b/BioArchLinux/r-gscreend/PKGBUILD
index 5431b3601f..af62159701 100644
--- a/BioArchLinux/r-gscreend/PKGBUILD
+++ b/BioArchLinux/r-gscreend/PKGBUILD
@@ -1,10 +1,10 @@
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=gscreend
-_pkgver=1.14.0
+_pkgver=1.16.1
 pkgname=r-${_pkgname,,}
 pkgver=${_pkgver//-/.}
-pkgrel=2
+pkgrel=0
 pkgdesc="Analysis of pooled genetic screens"
 arch=(any)
 url="https://bioconductor.org/packages/$_pkgname"
@@ -16,13 +16,14 @@ depends=(
   r-summarizedexperiment
 )
 optdepends=(
+  r-biocstyle
   r-knitr
   r-rmarkdown
   r-testthat
 )
-source=("https://bioconductor.org/packages/3.17/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-md5sums=('6d79483ce0c766b1779a2dab5614e249')
-b2sums=('0df96be2c84afbeb760dbe395c0b03bb7998afd87c84f4ce4b8d91a88d9f6a9476ed7643e844703f90e292394a8e9178a1322847577cef0f8938da7304ddaa73')
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('37387e3427e8079e45abb8db9de731ad')
+b2sums=('67ff9c81999aa42442012702611f4f491d984d4d19761090dad3f6410c73e972042b2b0a27cc8588144a7a8cfded917d9c3cc7004bca4c1f1544d19fe4685746')
 
 build() {
   mkdir build
diff --git a/BioArchLinux/r-gscreend/lilac.yaml b/BioArchLinux/r-gscreend/lilac.yaml
index 8c5df769b3..1ebfbc0b2a 100644
--- a/BioArchLinux/r-gscreend/lilac.yaml
+++ b/BioArchLinux/r-gscreend/lilac.yaml
@@ -8,6 +8,8 @@ repo_depends:
 - r-nloptr
 - r-summarizedexperiment
 update_on:
-- source: manual
-  manual: 1.14.0#6d79483ce0c766b1779a2dab5614e249
+- source: rpkgs
+  pkgname: gscreend
+  repo: bioc
+  md5: true
 - alias: r