diff --git a/BioArchLinux/r-ggvenn/PKGBUILD b/BioArchLinux/r-ggvenn/PKGBUILD new file mode 100644 index 0000000000..7c1c5c2553 --- /dev/null +++ b/BioArchLinux/r-ggvenn/PKGBUILD @@ -0,0 +1,31 @@ +# Maintainer: Pekka Ristola + +_pkgname=ggvenn +_pkgver=0.1.10 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Draw Venn Diagram by 'ggplot2'" +arch=(any) +url="https://cran.r-project.org/package=${_pkgname}" +license=(MIT) +depends=( + r-dplyr + r-ggplot2 +) +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('eb81af74065bc4f88778e8f88b7bbd8e') +sha256sums=('cde116f117266cca27d8cd20205512e602c23514db6d97caaa950b9b21fa873e') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} diff --git a/BioArchLinux/r-ggvenn/lilac.py b/BioArchLinux/r-ggvenn/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-ggvenn/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-ggvenn/lilac.yaml b/BioArchLinux/r-ggvenn/lilac.yaml new file mode 100644 index 0000000000..0816cc88d8 --- /dev/null +++ b/BioArchLinux/r-ggvenn/lilac.yaml @@ -0,0 +1,13 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-dplyr +- r-ggplot2 +update_on: +- source: rpkgs + pkgname: ggvenn + repo: cran + md5: true +- alias: r diff --git a/BioArchLinux/r-screenr/PKGBUILD b/BioArchLinux/r-screenr/PKGBUILD new file mode 100644 index 0000000000..35ecf8c81d --- /dev/null +++ b/BioArchLinux/r-screenr/PKGBUILD @@ -0,0 +1,58 @@ +# Maintainer: Pekka Ristola + +_pkgname=ScreenR +_pkgver=1.4.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Package to Perform High Throughput Biological Screening" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-dplyr + r-edger + r-ggplot2 + r-ggvenn + r-limma + r-magrittr + r-patchwork + r-purrr + r-rlang + r-scales + r-stringr + r-tibble + r-tidyr + r-tidyselect +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-covr + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('bb8bd3276b17f7e0d63de9c19e64473d') +sha256sums=('a1b28353c9292d6760fa60e1f1bdd9a884619332c5f69ab6c5ea2ef3b9fa5b88') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} diff --git a/BioArchLinux/r-screenr/lilac.py b/BioArchLinux/r-screenr/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-screenr/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-screenr/lilac.yaml b/BioArchLinux/r-screenr/lilac.yaml new file mode 100644 index 0000000000..9f533340c3 --- /dev/null +++ b/BioArchLinux/r-screenr/lilac.yaml @@ -0,0 +1,27 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-dplyr +- r-edger +- r-ggplot2 +- r-ggvenn +- r-limma +- r-magrittr +- r-patchwork +- r-purrr +- r-rlang +- r-scales +- r-stringr +- r-tibble +- r-tidyr +- r-tidyselect +repo_makedepends: +- r-testthat +update_on: +- source: rpkgs + pkgname: ScreenR + repo: bioc + md5: true +- alias: r