r-treedist: init

BioArchLinux/r-treedist/PKGBUILD

@@ -0,0 +1,64 @@
+# system requirements: C++17
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=TreeDist
+_pkgver=2.7.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Calculate and Map Distances Between Phylogenetic Trees'
+arch=('x86_64')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-ape
+  r-cli
+  r-colorspace
+  r-memoise
+  r-phangorn
+  r-rcpp
+  r-rdpack
+  r-shiny
+  r-shinyjs
+  r-treetools
+)
+optdepends=(
+  r-bookdown
+  r-cluster
+  r-ggplot2
+  r-hypervolume
+  r-kdensity
+  r-knitr
+  r-mass
+  r-parallel
+  r-plotly
+  r-plottools
+  r-protoclust
+  r-quartet
+  r-rcpp
+  r-readxl
+  r-rgl
+  r-rmarkdown
+  r-rogue
+  r-spelling
+  r-ternary
+  r-testthat
+  r-treedistdata
+  r-treesearch
+  r-umatrix
+  r-uwot
+  r-vdiffr
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-treedist/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-treedist/lilac.yaml

@@ -0,0 +1,20 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: starsareintherose
+repo_depends:
+- r-ape
+- r-cli
+- r-colorspace
+- r-memoise
+- r-phangorn
+- r-rcpp
+- r-rdpack
+- r-shiny
+- r-shinyjs
+- r-treetools
+update_on:
+- source: rpkgs
+  repo: cran
+  md5: true
+  pkgname: TreeDist
+- alias: r