r-*: use metadata checks for several packages

BioArchLinux/r-delaporte/PKGBUILD

@@ -3,14 +3,16 @@
 _pkgname=Delaporte
 _pkgver=8.3.0
 pkgname=r-${_pkgname,,}
-pkgver=8.3.0
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Statistical Functions for the Delaporte Distribution'
-arch=('x86_64')
-url="https://cran.r-project.org/package=${_pkgname}"
-license=('BSD')
+pkgdesc="Statistical Functions for the Delaporte Distribution"
+arch=(x86_64)
+url="https://cran.r-project.org/package=$_pkgname"
+license=(BSD)
 depends=(
   r
+)
+makedepends=(
   gcc-fortran
 )
 optdepends=(
@@ -18,15 +20,18 @@ optdepends=(
   r-tinytest
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('7eeb59c2d7fb106732abbda710acab065418426aa1f6f5734f0dc2b1724f89bc')
+md5sums=('cc965f62f3d69e9c785e98890c9536db')
+b2sums=('403e1862a517e5fc0d39b2066a54298cf4be5e63f9c6529f5ec3acb234930cecfe0e14376f32bb8d30a7f70eb540456a83659c06ae906365c2f20a72ccf2d9d4')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
-  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-delaporte/lilac.py

@@ -1,12 +1,16 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(
+        _G,
+        expect_systemrequirements = "A version of Fortran supporting the LOG_GAMMA Intrinsic",
+    )
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-delaporte/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: Delaporte_([\d._-]+).tar.gz
-  source: regex
-  url: https://cran.r-project.org/package=Delaporte
+- source: rpkgs
+  pkgname: Delaporte
+  repo: cran
+  md5: true
 - alias: r

BioArchLinux/r-hilbertvis/PKGBUILD

@@ -3,12 +3,12 @@
 _pkgname=HilbertVis
 _pkgver=1.60.0
 pkgname=r-${_pkgname,,}
-pkgver=1.60.0
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Hilbert curve visualization'
-arch=('x86_64')
-url="https://bioconductor.org/packages/${_pkgname}"
-license=('GPL')
+pkgdesc="Hilbert curve visualization"
+arch=(x86_64)
+url="https://bioconductor.org/packages/$_pkgname"
+license=(GPL3)
 depends=(
   r
 )
@@ -17,14 +17,15 @@ optdepends=(
   r-iranges
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('96c7a4dfe42158e45bfb7a1e1a33e2577b23409249402cfa5ae742f2420060d5')
+md5sums=('b30abc9c50034b41daf1399031d657e3')
+b2sums=('01bf68e2e9abfb2288f0867103497b6d23631ba7499d3c74956e8fc376ec65b4df95131524cc45e127edbd62ef3662015218b3035f376f95a1bfc717c0d6986b')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-hilbertvis/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-hilbertvis/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: HilbertVis_([\d._-]+).tar.gz
-  source: regex
-  url: https://bioconductor.org/packages/HilbertVis
+- source: rpkgs
+  pkgname: HilbertVis
+  repo: bioc
+  md5: true
 - alias: r

BioArchLinux/r-lars/PKGBUILD

@@ -3,12 +3,12 @@
 _pkgname=lars
 _pkgver=1.3
 pkgname=r-${_pkgname,,}
-pkgver=1.3
+pkgver=${_pkgver//-/.}
 pkgrel=7
-pkgdesc='Least Angle Regression, Lasso and Forward Stagewise'
-arch=('x86_64')
-url="https://cran.r-project.org/package=${_pkgname}"
-license=('GPL')
+pkgdesc="Least Angle Regression, Lasso and Forward Stagewise"
+arch=(x86_64)
+url="https://cran.r-project.org/package=$_pkgname"
+license=(GPL2)
 depends=(
   r
 )
@@ -16,14 +16,15 @@ makedepends=(
   gcc-fortran
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('c69e6a8da6a3344c0915dd1fd4c78fec5cdf50c62cf6297476e9bb7dc10b549d')
+md5sums=('f91c3128512aea0b607076f7a46693c6')
+b2sums=('d14fc6b4494b5edbf383f5940f05f2459c345a135cf4194545fe2bd219143e68a2381bce56ce4a80eccd0d9488e9be333c0669052e6d8bb8a9b448c53a1dcf09')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-lars/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-lars/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: lars_([\d._-]+).tar.gz
-  source: regex
-  url: https://cran.r-project.org/package=lars
+- source: rpkgs
+  pkgname: lars
+  repo: cran
+  md5: true
 - alias: r

BioArchLinux/r-nozzle.r1/PKGBUILD

@@ -3,24 +3,25 @@
 _pkgname=Nozzle.R1
 _pkgver=1.1-1.1
 pkgname=r-${_pkgname,,}
-pkgver=1.1.1.1
+pkgver=${_pkgver//-/.}
 pkgrel=5
-pkgdesc='Nozzle Reports'
-arch=('any')
-url="https://cran.r-project.org/package=${_pkgname}"
-license=('LGPL')
+pkgdesc="Nozzle Reports"
+arch=(any)
+url="https://cran.r-project.org/package=$_pkgname"
+license=(LGPL2.1)
 depends=(
   r
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('777e0fdada4a4d4c590885897a52beb91a5d5a1b8073c471448b3644d9715639')
+md5sums=('284892dbc261f1e919855a99e20b06ca')
+b2sums=('0bdd96b5fe864fe3f3b779281dcfdd267e1f2dde9614d1a930997289ad82eeba2b77125dc1383be67ff9c2217c6829e965baa09ce8d76215c737fec52d3bcc01')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-nozzle.r1/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-nozzle.r1/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: Nozzle.R1_([\d._-]+).tar.gz
-  source: regex
-  url: https://cran.r-project.org/package=Nozzle.R1
+- source: rpkgs
+  pkgname: Nozzle.R1
+  repo: cran
+  md5: true
 - alias: r

BioArchLinux/r-timsac/PKGBUILD

@@ -3,12 +3,12 @@
 _pkgname=timsac
 _pkgver=1.3.8-4
 pkgname=r-${_pkgname,,}
-pkgver=1.3.8.4
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Time Series Analysis and Control Package'
-arch=('x86_64')
-url="https://cran.r-project.org/package=${_pkgname}"
-license=('GPL')
+pkgdesc="Time Series Analysis and Control Package"
+arch=(x86_64)
+url="https://cran.r-project.org/package=$_pkgname"
+license=(GPL)
 depends=(
   r
 )
@@ -16,14 +16,15 @@ makedepends=(
   gcc-fortran
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('53ce2658286e18472110444d4157136ab7aa95661b2a7a24c8ea91103eb3b83e')
+md5sums=('e325a5e8bceab47722a95d487c6a8f06')
+b2sums=('e12504e0e852ba04d69f77ae26412d52a084a9b62b5c15daa1385be72bb5ed2f2246647c1af48069957d5b4699e790201e725a174decf7fb4967a5da86aa78b7')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-timsac/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-timsac/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: timsac_([\d._-]+).tar.gz
-  source: regex
-  url: https://cran.r-project.org/package=timsac
+- source: rpkgs
+  pkgname: timsac
+  repo: cran
+  md5: true
 - alias: r