mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
r-*: use metadata checks for several packages
This commit is contained in:
Pekka Ristola
parent
87bab07899
commit
39e497c097
96 changed files with 693 additions and 609 deletions
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@ -3,14 +3,13 @@
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_pkgname=geneClassifiers
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_pkgver=1.26.0
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pkgname=r-${_pkgname,,}
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pkgver=1.26.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Application of gene classifiers'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Application of gene classifiers"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-only')
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depends=(
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r
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r-biobase
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r-biocgenerics
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)
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@ -18,14 +17,15 @@ optdepends=(
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('f5a45f5b24da69f0879075ae5aae2f469c2e220d13bb47fa2eb95f8516fb7f1f')
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md5sums=('79b7de2354913e5a91e6026f3f815a46')
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b2sums=('ddfe701a68b041c640f1cb5ce5acb483f9263daa58b98928ab84a71cee4b34848c9163e21412efd2b42c32391217a138cf1b71497dc19bfba073b4ad6ca97ef2')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -6,7 +6,8 @@ repo_depends:
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- r-biobase
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- r-biocgenerics
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update_on:
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- regex: geneClassifiers_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/geneClassifiers
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- source: rpkgs
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pkgname: geneClassifiers
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repo: bioc
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md5: true
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- alias: r
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@ -3,14 +3,13 @@
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_pkgname=GeneExpressionSignature
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_pkgver=1.48.0
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pkgname=r-${_pkgname,,}
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pkgver=1.48.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Gene Expression Signature based Similarity Metric'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Gene Expression Signature based Similarity Metric"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-only')
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depends=(
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r
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r-biobase
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)
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optdepends=(
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@ -21,14 +20,15 @@ optdepends=(
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r-rmarkdown
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('3eef9f1b9b54d1e4974ea0a74be3ca967f44e7510e25521035e1dffb65b8a840')
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md5sums=('ee82254ee781e3cd6657c89d94e052b3')
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b2sums=('0046a7d5b8301e52923cc35e969de8a891c97da5156a67087e645705435a3e4ce3510b7ddb426db41d3e7e2641d181940edd39411ae8ab6481c5ad4e56fab631')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -5,7 +5,8 @@ maintainers:
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repo_depends:
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- r-biobase
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update_on:
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- regex: GeneExpressionSignature_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/GeneExpressionSignature
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- source: rpkgs
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pkgname: GeneExpressionSignature
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repo: bioc
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md5: true
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- alias: r
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@ -3,25 +3,25 @@
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_pkgname=geneRecommender
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_pkgver=1.74.0
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pkgname=r-${_pkgname,,}
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pkgver=1.74.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='A gene recommender algorithm to identify genes coexpressed with a query set of genes'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="A gene recommender algorithm to identify genes coexpressed with a query set of genes"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-or-later')
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depends=(
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r
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r-biobase
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('89202dd62cb18ff0a577ec8d38f72206d30ddaf90e39a1fecc8fa446399efef2')
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md5sums=('cd697c11912a8f48b5ceaf0abfbb206e')
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b2sums=('71780dc1088cea72759f462bdb85878cb62a09ea1b0329d55b7d040da36e3a64fa43fb6d245c5c45ad003ffe3cf0160f081bf8b6199aba2bf693d2928da15e16')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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|
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|
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -5,7 +5,8 @@ maintainers:
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repo_depends:
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- r-biobase
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update_on:
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- regex: geneRecommender_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/geneRecommender
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- source: rpkgs
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pkgname: geneRecommender
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repo: bioc
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md5: true
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- alias: r
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@ -3,14 +3,13 @@
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_pkgname=GSEAlm
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_pkgver=1.62.0
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pkgname=r-${_pkgname,,}
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pkgver=1.62.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Linear Model Toolset for Gene Set Enrichment Analysis'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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pkgdesc="Linear Model Toolset for Gene Set Enrichment Analysis"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('Artistic-2.0')
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depends=(
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r
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r-biobase
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)
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optdepends=(
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@ -25,14 +24,15 @@ optdepends=(
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r-rcolorbrewer
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('08e34285f60eb07ceda3ce3e78a9f7be1afce4716f12d73efe168b7e5e91aa46')
|
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md5sums=('b88623d080b75bb6775026e9e6c4dd9e')
|
||||
b2sums=('00622218eab3b7b88d78cef883856afe89f2c15ca58aca3f8754390c5e59fafc4e42288ce0266ddd4c790296a3fc0292ff5be0c752f0ce2fef3d965e3b2e1bba')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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|
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -5,7 +5,8 @@ maintainers:
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repo_depends:
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- r-biobase
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update_on:
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- regex: GSEAlm_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/GSEAlm
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- source: rpkgs
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pkgname: GSEAlm
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repo: bioc
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md5: true
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- alias: r
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@ -3,25 +3,25 @@
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_pkgname=HELP
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_pkgver=1.60.0
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pkgname=r-${_pkgname,,}
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pkgver=1.60.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Tools for HELP data analysis'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Tools for HELP data analysis"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-or-later')
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depends=(
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r
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r-biobase
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('3fb232600983542245885ecc5d3b5623e0ef3d28b314a16ae104e4fc6cbea560')
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md5sums=('d7a1038ee6eb5ec01393b39e30e028fe')
|
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b2sums=('ca5a120a258060f9adc22f4903a655861302e431ec20caaf8f4863025b609c8589f2fa70c390ff8b837f0587ddf028e0569b6fc088c5c47793e7d64b9886b7c5')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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|
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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|
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def post_build():
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git_pkgbuild_commit()
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|
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|
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|
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@ -5,7 +5,8 @@ maintainers:
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repo_depends:
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- r-biobase
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update_on:
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- regex: HELP_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/HELP
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- source: rpkgs
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pkgname: HELP
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repo: bioc
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md5: true
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- alias: r
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|
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|
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@ -3,25 +3,25 @@
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_pkgname=HEM
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_pkgver=1.74.0
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pkgname=r-${_pkgname,,}
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pkgver=1.74.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Heterogeneous error model for identification of differentially expressed genes under multiple conditions'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Heterogeneous error model for identification of differentially expressed genes under multiple conditions"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-or-later')
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depends=(
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||||
r
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r-biobase
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('58cba3031e2454c122bacbcf3e20fd215bb2650bea46c3eb0941900fe31131fe')
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md5sums=('3ad1825d95504eaf9e2bcad8438816f5')
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b2sums=('bb03d64cdaf822363d3db74fea45b1bbf47d163453935b2b110564246d05b98bd1901385f9cf0f52db63941d4b8ddb591ff88f97d4d5ea80aaa118eb9e31149d')
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|
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build() {
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||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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||||
mkdir build
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||||
R CMD INSTALL -l build "$_pkgname"
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||||
}
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|
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package() {
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||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
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||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
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install -d "$pkgdir/usr/lib/R/library"
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||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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||||
# vim:set ts=2 sw=2 et:
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|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: HEM_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/HEM
|
||||
- source: rpkgs
|
||||
pkgname: HEM
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,26 +3,26 @@
|
|||
_pkgname=hopach
|
||||
_pkgver=2.62.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=2.62.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)"
|
||||
arch=(x86_64)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-biocgenerics
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('9a84cf8bdb414ec7a188ee4c4bb4ceed9a47ef6d0534ecabd2889e72cec419ec')
|
||||
md5sums=('0310e9a4e3a34dfe2bb4edf0dbb38b16')
|
||||
b2sums=('6fbc093c3aacccba172217c176cf657080dd11dc74bc228ae0783baf0d755f16dfd9f73de9ff99728447ec12cbf5112a3065f640a9c40c775c7a64159b8250b4')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -6,7 +6,8 @@ repo_depends:
|
|||
- r-biobase
|
||||
- r-biocgenerics
|
||||
update_on:
|
||||
- regex: hopach_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/hopach
|
||||
- source: rpkgs
|
||||
pkgname: hopach
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,26 +3,26 @@
|
|||
_pkgname=HybridMTest
|
||||
_pkgver=1.46.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.46.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Hybrid Multiple Testing'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Hybrid Multiple Testing"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-fdrtool
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('e1bc4ca4b8cd265346f180b072be4c267cecfc00d4a1b3b03c6d14d2148371ca')
|
||||
md5sums=('a2b1764b0e458f82e6055a3ebdf90933')
|
||||
b2sums=('5cf6f18ee78817270556858f36d2048a99ae9848a0b0a94d17220aca293de089b6c88a78bbcabc428c6c629ed671079fb2e7261579a5dca38e100715ce601aca')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,16 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(
|
||||
_G,
|
||||
expect_license = "GPL Version 2 or later",
|
||||
)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -6,7 +6,8 @@ repo_depends:
|
|||
- r-biobase
|
||||
- r-fdrtool
|
||||
update_on:
|
||||
- regex: HybridMTest_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/HybridMTest
|
||||
- source: rpkgs
|
||||
pkgname: HybridMTest
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,14 +3,13 @@
|
|||
_pkgname=iterClust
|
||||
_pkgver=1.24.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.24.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Iterative Clustering'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('custom')
|
||||
pkgdesc="Iterative Clustering"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('LicenseRef-iterClust')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
optdepends=(
|
||||
|
|
@ -18,15 +17,18 @@ optdepends=(
|
|||
r-tsne
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('cf36aa1aafeaa328e4c5483bbb88768b30fe8c37483834b34ccd7af20e63504c')
|
||||
md5sums=('af72d13d4200d5883ae63a99f0a49a69')
|
||||
b2sums=('9811c7f4888c26f41f5842cc110cca83ad5bf80a7735ef658a2e9dac7ebcb317975308b73fe42e1be7235ac76b38c731c08bd431a66c390dcb5a0da6609869f5')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
|
||||
install -d "$pkgdir/usr/share/licenses/$pkgname"
|
||||
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,16 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(
|
||||
_G,
|
||||
expect_license = "file LICENSE",
|
||||
)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: iterClust_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/iterClust
|
||||
- source: rpkgs
|
||||
pkgname: iterClust
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,26 +3,26 @@
|
|||
_pkgname=KEGGandMetacoreDzPathwaysGEO
|
||||
_pkgver=1.22.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.22.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Disease Datasets from GEO'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Disease Datasets from GEO"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-only')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-biocgenerics
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('7ae2c43cbd4add25c2003946c819f391a11ce8bd16a0d68a8e88915bfa2fb6e6')
|
||||
md5sums=('3a5180de47f1c28949b77db9f79b44ed')
|
||||
b2sums=('f447a252beb27db482cdcdbbd3a9e3aebe30e66de125012c54cefc4cbd8df11592c9cc90a73e8b6c4806d560c99329c7ccc74f74e1b9c9d5c76c443f2739fa9b')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -6,7 +6,8 @@ repo_depends:
|
|||
- r-biobase
|
||||
- r-biocgenerics
|
||||
update_on:
|
||||
- regex: KEGGandMetacoreDzPathwaysGEO_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
|
||||
- source: rpkgs
|
||||
pkgname: KEGGandMetacoreDzPathwaysGEO
|
||||
repo: bioc-data-experiment
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,26 +3,26 @@
|
|||
_pkgname=KEGGdzPathwaysGEO
|
||||
_pkgver=1.40.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.40.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='KEGG Disease Datasets from GEO'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="KEGG Disease Datasets from GEO"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-only')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-biocgenerics
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('8ba16875cb804f3283e2b745c1c7416d2b697d941d16ac68e289377604664617')
|
||||
md5sums=('2f30f9ac05c04214d25a9d49fb4ce8bd')
|
||||
b2sums=('f2fafcf2b133ee418959bc5aefdac64ada5d61d34225163ccbc626645af48fc7e3db4386692714b26d778929a4b489f2fb20c09ad12d6ca52ee18ada6b30ea3d')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -6,7 +6,8 @@ repo_depends:
|
|||
- r-biobase
|
||||
- r-biocgenerics
|
||||
update_on:
|
||||
- regex: KEGGdzPathwaysGEO_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/KEGGdzPathwaysGEO
|
||||
- source: rpkgs
|
||||
pkgname: KEGGdzPathwaysGEO
|
||||
repo: bioc-data-experiment
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,25 +3,25 @@
|
|||
_pkgname=lapmix
|
||||
_pkgver=1.68.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.68.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Laplace Mixture Model in Microarray Experiments'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Laplace Mixture Model in Microarray Experiments"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('d43b18bf5c5feec0d7249c59ad342b3cd15f6755f5fad71bcc62dee9249684cf')
|
||||
md5sums=('5d2611d1b39b06b05ed64ffab459a5a9')
|
||||
b2sums=('34eeb6c7ad07294954899f5327fb3902dd05dfb91981d14a34ab2f0e386375c0944489b04d8d3cc48b5c573323807c645cbcf2e841c64b6fe4e89f41cfa3a45d')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: lapmix_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/lapmix
|
||||
- source: rpkgs
|
||||
pkgname: lapmix
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,14 +3,13 @@
|
|||
_pkgname=MethPed
|
||||
_pkgver=1.30.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.30.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-only')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-randomforest
|
||||
)
|
||||
|
|
@ -21,14 +20,15 @@ optdepends=(
|
|||
r-markdown
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('52e4648d2e8d1efefb4d77f8b95946b49d46f02f11a2d45535483d0eff710af6')
|
||||
md5sums=('57b633da5d8548342b0a2071efe3c04d')
|
||||
b2sums=('467cd4c4fc992e901a5c1367063175c73e4ee535d1a1be3a77714238533644ed55af92b2118f442443ce647b23044135cf4600e2dce0c4b7a4dbb3f68fd6b0f6')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -6,7 +6,8 @@ repo_depends:
|
|||
- r-biobase
|
||||
- r-randomforest
|
||||
update_on:
|
||||
- regex: MethPed_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/MethPed
|
||||
- source: rpkgs
|
||||
pkgname: MethPed
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,25 +3,25 @@
|
|||
_pkgname=MiChip
|
||||
_pkgver=1.56.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.56.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='MiChip Parsing and Summarizing Functions'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="MiChip Parsing and Summarizing Functions"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('5697123140850b6fc6f2e5a1e6276c1b3c86409ca6977afa5eeacab7dc61e545')
|
||||
md5sums=('28daafdf6588314a9fad7a75b1671c10')
|
||||
b2sums=('53724155400095c7c637ed833198dce994dc08e3e34839d553a8a08de7fdbb20d085d5cfe0ad71d56e35d91c4e348aa9ba35e41ba815bee75cfbc8835c6b7c23')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: MiChip_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/MiChip
|
||||
- source: rpkgs
|
||||
pkgname: MiChip
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,14 +3,13 @@
|
|||
_pkgname=miRcomp
|
||||
_pkgver=1.32.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.32.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Tools to assess and compare miRNA expression estimatation methods'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Tools to assess and compare miRNA expression estimatation methods"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-only OR GPL-3.0-only')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-mircompdata
|
||||
)
|
||||
|
|
@ -23,14 +22,15 @@ optdepends=(
|
|||
r-shiny
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('f54ee2b806f3da5ba09a1e0951ef2596ac22553a7717be8f7907ba7264af1713')
|
||||
md5sums=('06b97d8829ca13b60dd4869a48b684ab')
|
||||
b2sums=('5a1cccc61f8bcd4b8d24fc1f220d8fc44b7e09aa06ae724bfd52f755585193016a010c818e079aea7481409b03f79e50aa5dcfb32e5009073f4550419e65ff91')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,16 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(
|
||||
_G,
|
||||
expect_license = "GPL-3 | file LICENSE",
|
||||
)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -6,7 +6,8 @@ repo_depends:
|
|||
- r-biobase
|
||||
- r-mircompdata
|
||||
update_on:
|
||||
- regex: miRcomp_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/miRcomp
|
||||
- source: rpkgs
|
||||
pkgname: miRcomp
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,25 +3,25 @@
|
|||
_pkgname=multiscan
|
||||
_pkgver=1.62.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.62.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='R package for combining multiple scans'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="R package for combining multiple scans"
|
||||
arch=(x86_64)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('9193d18c5ecf8465b44edddac53008b509a0bba4cce6a5e1d8050975e1d05027')
|
||||
md5sums=('58243690ff05bdbd30da46ea01e409a3')
|
||||
b2sums=('221c5aeab39bfab962cbde3bed12c049d03ed7a80531a34880231d0769f26280216165792f44c7fbd5ae98c1d9ee1b34dcd53c92ffd04c6656f01a7e5e023c76')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: multiscan_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/multiscan
|
||||
- source: rpkgs
|
||||
pkgname: multiscan
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,14 +3,13 @@
|
|||
_pkgname=multtest
|
||||
_pkgver=2.58.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=2.58.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Resampling-based multiple hypothesis testing'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('LGPL')
|
||||
pkgdesc="Resampling-based multiple hypothesis testing"
|
||||
arch=(x86_64)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('LGPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-biocgenerics
|
||||
)
|
||||
|
|
@ -18,14 +17,15 @@ optdepends=(
|
|||
r-snow
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('92c40644fb6a3adbca9cba1da864482ec5db737fcbcfc8c4e3cadc2e5e161d69')
|
||||
md5sums=('7d81a8460781f4a86f01a9df5fcf50d7')
|
||||
b2sums=('c2f2834ead992b781ea49e10941d505885815379847d4c06bd02c263d247ea9b4993d258e118e8f4690e4015913a218aff94efc13a347a0d47f0c4de889d1c53')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -6,7 +6,8 @@ repo_depends:
|
|||
- r-biobase
|
||||
- r-biocgenerics
|
||||
update_on:
|
||||
- regex: multtest_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/multtest
|
||||
- source: rpkgs
|
||||
pkgname: multtest
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,25 +3,25 @@
|
|||
_pkgname=NOISeq
|
||||
_pkgver=2.46.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=2.46.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Exploratory analysis and differential expression for RNA-seq data'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
pkgdesc="Exploratory analysis and differential expression for RNA-seq data"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('Artistic-2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('8b17b542bc278546c74a22c31fbd5e174530164b8355565ce5e90e7b08d34063')
|
||||
md5sums=('e7ea859871f96aa68269efa3a1e7dd46')
|
||||
b2sums=('e62cb5a315d817a5fa0958b1e14611281a526920d275c57b8bfb25d2bb296f148b92aaee8cbf605004243f7b01b9da3135ffdd44cd496d2624650e355fddb15e')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: NOISeq_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/NOISeq
|
||||
- source: rpkgs
|
||||
pkgname: NOISeq
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,25 +3,25 @@
|
|||
_pkgname=plgem
|
||||
_pkgver=1.74.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.74.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-only')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('efe1a7ce154f64857494fa95d8be80da6c32a0fe2533aed403b1b5dd878ab068')
|
||||
md5sums=('caa3e3fe048da49643b34bde9fcb834a')
|
||||
b2sums=('cfd79cc6fae15028b1743edb89fc761a01c83b04ab4d65647f08b34090c152ed241c90b19b2a38a4e4214cea12b355e39ae0f6605b3ecef0d3fe8d38d221f3d9')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: plgem_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/plgem
|
||||
- source: rpkgs
|
||||
pkgname: plgem
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,26 +3,26 @@
|
|||
_pkgname=PLPE
|
||||
_pkgver=1.62.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.62.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Local Pooled Error Test for Differential Expression with Paired High-throughput Data'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Local Pooled Error Test for Differential Expression with Paired High-throughput Data"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-lpe
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('614f11be46858c8269ede6ccc5f5db513e78fb13d43ccbfef4008e43b932f079')
|
||||
md5sums=('1a4887a4c08676e0ce69331caacc297e')
|
||||
b2sums=('a97859986d46d665381b99261c66ee7808287a0cc328c13e25fed0815951bbd4e1bf8ef153c301a0e4d1cadf44e9b8f66fcda9351be450b74ecd685c918f4866')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -6,7 +6,8 @@ repo_depends:
|
|||
- r-biobase
|
||||
- r-lpe
|
||||
update_on:
|
||||
- regex: PLPE_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/PLPE
|
||||
- source: rpkgs
|
||||
pkgname: PLPE
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,28 +3,28 @@
|
|||
_pkgname=PSEA
|
||||
_pkgver=1.36.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.36.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Population-Specific Expression Analysis.'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
pkgdesc="Population-Specific Expression Analysis"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('Artistic-2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
optdepends=(
|
||||
r-biocstyle
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('5ee830e1b1f6b11afa00ee2394405c0a79d4ae69d3124fe622e7ff6b99eaf609')
|
||||
md5sums=('c8f9f8210c265d722d76668e19a6fd7c')
|
||||
b2sums=('388de01f9286438d7fc5c35d1855768a6f90ce59734de754e5be3b6877c830e61a5cdf73d3f5167db30e9111f09bccb564fca4643aa51393f93cb75d55f3462b')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: PSEA_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/PSEA
|
||||
- source: rpkgs
|
||||
pkgname: PSEA
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,25 +3,25 @@
|
|||
_pkgname=randPack
|
||||
_pkgver=1.48.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.48.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Randomization routines for Clinical Trials'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
pkgdesc="Randomization routines for Clinical Trials"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('Artistic-2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('d3610cdc9225f9fe70c93a75a08b6472f33ece9fcbe24fd1fb19d9222842c1e1')
|
||||
md5sums=('71791ade28f58d981a510c8b660ae1e7')
|
||||
b2sums=('f7ad40bdd70925b5cfa11c5befa3362232eaa79424401b4803b049d02df9f48ab20a6d95d0116c47d1cab39009b3f7427fdd7681933e6ca0755a484c13c954aa')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,16 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(
|
||||
_G,
|
||||
expect_license = "Artistic 2.0",
|
||||
)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: randPack_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/randPack
|
||||
- source: rpkgs
|
||||
pkgname: randPack
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,25 +3,25 @@
|
|||
_pkgname=rbsurv
|
||||
_pkgver=2.60.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=2.60.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Robust likelihood-based survival modeling with microarray data'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Robust likelihood-based survival modeling with microarray data"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('90a9b4d776c70ec276addfd9bd6af67d9ab4080dd7262974142a23f961ab7a06')
|
||||
md5sums=('e2791c7a40004e031fd88e0995f4dc13')
|
||||
b2sums=('df963d7257b92bd77c003f933c89aeee8265709cd2e699143af22e3f6dcfb440ffa934842593905746e7b252d84468cefa0bcd1a2b75ed4e14f78ff2eecb2690')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: rbsurv_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/rbsurv
|
||||
- source: rpkgs
|
||||
pkgname: rbsurv
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,14 +3,13 @@
|
|||
_pkgname=rcellminerData
|
||||
_pkgver=2.24.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=2.24.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('LGPL')
|
||||
pkgdesc="Molecular Profiles and Drug Response for the NCI-60 Cell Lines"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('LGPL-3.0-only')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
optdepends=(
|
||||
|
|
@ -21,14 +20,15 @@ optdepends=(
|
|||
r-testthat
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('e66ee1b2ff45428705b89fa9e0dc1ed9621de13a1997653ecc5b3885236cb13a')
|
||||
md5sums=('2f45852d4eeb438b6a1feb156200b2bc')
|
||||
b2sums=('9bb7bd00b38e89509f9ab1f6e43d5b1d3882a53f54625a53f6026af5e1265eea866ef36e9210a9c99f4256ca3b00fe2646ffcd199e8e1e687afc4a3c67dcfa72')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,16 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(
|
||||
_G,
|
||||
expect_license = "LGPL-3 + file LICENSE",
|
||||
)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: rcellminerData_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/rcellminerData
|
||||
- source: rpkgs
|
||||
pkgname: rcellminerData
|
||||
repo: bioc-data-experiment
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,28 +3,28 @@
|
|||
_pkgname=ReadqPCR
|
||||
_pkgver=1.48.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.48.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Read qPCR data'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('LGPL')
|
||||
pkgdesc="Read qPCR data"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('LGPL-3.0-only')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
optdepends=(
|
||||
r-qpcr
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('23316bb543f9860adc987b207c41488a0a3b0bfd28c37681415ba5f3555186a7')
|
||||
md5sums=('b92a0fe88b39abffbc0c46c36a76a8de')
|
||||
b2sums=('e429f64951a00d4da1c95b83a4f2d1c2d1f5b4d279d34be776ed640b751bf766913eace515f4a0b44c6efd5739cf2d936c88437a46961b29a53175e9824d7bbe')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: ReadqPCR_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/ReadqPCR
|
||||
- source: rpkgs
|
||||
pkgname: ReadqPCR
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,14 +3,13 @@
|
|||
_pkgname=RTCA
|
||||
_pkgver=1.54.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.54.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Open-source toolkit to analyse data from xCELLigence System (RTCA)'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('LGPL')
|
||||
pkgdesc="Open-source toolkit to analyse data from xCELLigence System (RTCA)"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('LGPL-3.0-only')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-gtools
|
||||
r-rcolorbrewer
|
||||
|
|
@ -19,14 +18,15 @@ optdepends=(
|
|||
r-xtable
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('7f8c010d92dc423dd6d0d40385e4bffd57e5256dfbe11ffa5e2fd763e9466fc5')
|
||||
md5sums=('8e1039d013ef1d5e08b48003ecffc25a')
|
||||
b2sums=('43586f308147142c56f6a1eb46f1a24a12373040043b4bdce83ee328e8d9c50711f80ae7216454e41874e034f4b95f54de2f56a03b031c4c4ced93426d545094')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -7,7 +7,8 @@ repo_depends:
|
|||
- r-gtools
|
||||
- r-rcolorbrewer
|
||||
update_on:
|
||||
- regex: RTCA_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/RTCA
|
||||
- source: rpkgs
|
||||
pkgname: RTCA
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,25 +3,25 @@
|
|||
_pkgname=RUVnormalizeData
|
||||
_pkgver=1.22.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.22.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Gender data for the RUVnormalize package'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Gender data for the RUVnormalize package"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-3.0-only')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('37109e18c3c0399919a3ad7058a537392fa18501b88fd78dbc9af34df9dc13eb')
|
||||
md5sums=('5d7104746a5cac16500870312dd769a6')
|
||||
b2sums=('b098dfd1ad33b5ad952eebd84e5fd5363df2973dc9702576bcfacee06001bba0eb4370fc5373080caca8551c7225b27677832fc85b79a330519e718f381fe798')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: RUVnormalizeData_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/RUVnormalizeData
|
||||
- source: rpkgs
|
||||
pkgname: RUVnormalizeData
|
||||
repo: bioc-data-experiment
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,14 +3,13 @@
|
|||
_pkgname=sigsquared
|
||||
_pkgver=1.34.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.34.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Gene signature generation for functionally validated signaling pathways'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Gene signature generation for functionally validated signaling pathways"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-3.0-only')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
optdepends=(
|
||||
|
|
@ -18,14 +17,15 @@ optdepends=(
|
|||
r-runit
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('3b58cb88db445f4786a6088c45d7be4264539d3536b2e4befd8ff6076f7e4acb')
|
||||
md5sums=('f7dfbb4c066df8fe146b2b73f8180195')
|
||||
b2sums=('7535ede28ded57e6cb6857df9ab6919c2e6d7099f0f17217ca42755e5768f6c30efdbdb16c1fd7a887ba273ee6960a1192c4a27bcf4769a2daaa5fc335e25d5e')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,16 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(
|
||||
_G,
|
||||
expect_license = "GPL version 3",
|
||||
)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: sigsquared_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/sigsquared
|
||||
- source: rpkgs
|
||||
pkgname: sigsquared
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,14 +3,13 @@
|
|||
_pkgname=spkTools
|
||||
_pkgver=1.58.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.58.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Methods for Spike-in Arrays'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Methods for Spike-in Arrays"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-gtools
|
||||
r-rcolorbrewer
|
||||
|
|
@ -19,14 +18,15 @@ optdepends=(
|
|||
r-xtable
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a49043efbb289e10024f38c92c67228767b72345eb81c9f690479eb5428c82b2')
|
||||
md5sums=('9cc7d56d0cf0eec1e65d47d262525ba1')
|
||||
b2sums=('c04d82dc067bfdda40355cd123d7122bc1d375a06c6bdaea1a451ef52fe05a3e169db6f2afdffeb6542d1ec51ab3603b496b6f5457d5777958debf670613625e')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -7,7 +7,8 @@ repo_depends:
|
|||
- r-gtools
|
||||
- r-rcolorbrewer
|
||||
update_on:
|
||||
- regex: spkTools_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/spkTools
|
||||
- source: rpkgs
|
||||
pkgname: spkTools
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,14 +3,13 @@
|
|||
_pkgname=twilight
|
||||
_pkgver=1.78.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.78.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Estimation of local false discovery rate'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Estimation of local false discovery rate"
|
||||
arch=(x86_64)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
optdepends=(
|
||||
|
|
@ -18,14 +17,15 @@ optdepends=(
|
|||
r-vsn
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('70c3802ab0c4850d0a5bfcaba9b1e97c7ed66520c05bad30cd4c737d3ecaef01')
|
||||
md5sums=('fa6b01126ace9423edfc04757f6392b1')
|
||||
b2sums=('35d46c87242b3fe9e1bdbf089a2bee99801368001d5c5aa52a5ddf2f9e83ea2308ed7e78c2320e9ff02c018289e8dfce472d9368a1b2af4506c372d918a1f196')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: twilight_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/twilight
|
||||
- source: rpkgs
|
||||
pkgname: twilight
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,27 +3,27 @@
|
|||
_pkgname=UNDO
|
||||
_pkgver=1.44.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.44.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-only')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-biocgenerics
|
||||
r-nnls
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('d145f6aa55e1a8c1ffd29533573a8ffbd404caebd156e2ea782151c71cf14852')
|
||||
md5sums=('a94665c036a09fbf3728f0a1ad220dfa')
|
||||
b2sums=('06d24ea76e21b19d94616e038a524e32612b9c1fe528777084e1aabf88d84456ca7d9c8c923b6ea2aa181d89254cde3c83ccc9eff4aabae3977314178fc95623')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -7,7 +7,8 @@ repo_depends:
|
|||
- r-biocgenerics
|
||||
- r-nnls
|
||||
update_on:
|
||||
- regex: UNDO_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/UNDO
|
||||
- source: rpkgs
|
||||
pkgname: UNDO
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,25 +3,25 @@
|
|||
_pkgname=yeastCC
|
||||
_pkgver=1.42.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.42.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray data'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
pkgdesc="Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray data"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('Artistic-2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('d6654c09539b2a8a84d0e07c8e984fa97763f3760b78acafabeddbcfa91c74a9')
|
||||
md5sums=('847d9bba73cb25f458f608c2cd6bf0e8')
|
||||
b2sums=('f2574ad0b67f157d99f0bad836090e191b01edf6bf6e3646b87a2a152b4e2952fcdbab1669aed9f89fa4c9afc1de286f90e04c30452ccdf15c0a64f1a9533dd9')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -5,7 +5,8 @@ maintainers:
|
|||
repo_depends:
|
||||
- r-biobase
|
||||
update_on:
|
||||
- regex: yeastCC_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/yeastCC
|
||||
- source: rpkgs
|
||||
pkgname: yeastCC
|
||||
repo: bioc-data-experiment
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue