r-gopro: use metadata checks

BioArchLinux/r-gopro/PKGBUILD

@@ -1,18 +1,17 @@
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=GOpro
 _pkgver=1.26.0
 pkgname=r-${_pkgname,,}
-pkgver=1.26.0
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Find the most characteristic gene ontology terms for groups of human genes'
-arch=('x86_64')
+pkgdesc="Find the most characteristic gene ontology terms for groups of human genes"
+arch=(x86_64)
 url="https://bioconductor.org/packages/${_pkgname}"
-license=('GPL')
+license=(GPL3)
 depends=(
-  r
   r-annotationdbi
-  r-bh
   r-dendextend
   r-doparallel
   r-foreach
@@ -23,6 +22,12 @@ depends=(
   r-rcpp
   r-s4vectors
 )
+makedepends=(
+  r-bh
+)
+checkdepends=(
+  r-testthat
+)
 optdepends=(
   r-biocstyle
   r-knitr
@@ -31,14 +36,20 @@ optdepends=(
   r-testthat
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('b0112bd7b59baf1aae2c8bf7f3496600')
 sha256sums=('9a8b522dbec201879429252069e772c7e93c5f9244a03782f47db6e9b1ee9ac1')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-gopro/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-gopro/lilac.yaml

@@ -1,10 +1,9 @@
 build_prefix: extra-x86_64
 maintainers:
-- github: starsareintherose
-  email: kuoi@bioarchlinux.org
+- github: pekkarr
+  email: pekkarr@protonmail.com
 repo_depends:
 - r-annotationdbi
-- r-bh
 - r-dendextend
 - r-doparallel
 - r-foreach
@@ -14,8 +13,12 @@ repo_depends:
 - r-org.hs.eg.db
 - r-rcpp
 - r-s4vectors
+repo_makedepends:
+- r-bh
+- r-testthat
 update_on:
-- regex: GOpro_([\d._-]+).tar.gz
-  source: regex
-  url: https://bioconductor.org/packages/GOpro
+- source: rpkgs
+  pkgname: GOpro
+  repo: bioc
+  md5: true
 - alias: r