fix: update (opt)depends for r pkgs

BioArchLinux/r-butcher/PKGBUILD

@@ -4,7 +4,7 @@ _pkgname=butcher
 _pkgver=0.3.2
 pkgname=r-${_pkgname,,}
 pkgver=0.3.2
-pkgrel=1
+pkgrel=2
 pkgdesc='Model Butcher'
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
@@ -25,6 +25,7 @@ optdepends=(
   r-clusterr
   r-clustmixtype
   r-covr
+  r-dbarts
   r-ddalpha
   r-dimred
   r-dplyr
@@ -35,6 +36,7 @@ optdepends=(
   r-ipred
   r-kernlab
   r-kknn
+  r-klar
   r-knitr
   r-mass
   r-mda
@@ -59,6 +61,7 @@ optdepends=(
   r-th.data
   r-usethis
   r-xgboost
+  r-xrf
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
 sha256sums=('e653fcbd28f558cbca5b83a0fa01c82664fe8207b7212d688e4d8acc2c53f71f')

BioArchLinux/r-classint/PKGBUILD

@@ -4,7 +4,7 @@ _pkgname=classInt
 _pkgver=0.4-9
 pkgname=r-${_pkgname,,}
 pkgver=0.4.9
-pkgrel=1
+pkgrel=2
 pkgdesc='Choose Univariate Class Intervals'
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"
@@ -17,6 +17,7 @@ optdepends=(
   r-knitr
   r-rmarkdown
   r-spdata
+  r-tinytest
   r-units
 )
 makedepends=(

BioArchLinux/r-enmix/PKGBUILD

@@ -4,7 +4,7 @@ _pkgname=ENmix
 _pkgver=1.34.01
 pkgname=r-${_pkgname,,}
 pkgver=1.34.01
-pkgrel=1
+pkgrel=2
 pkgdesc='Quality control and analysis tools for Illumina DNA methylation BeadChip'
 arch=('any')
 url="https://bioconductor.org/packages/${_pkgname}"
@@ -34,7 +34,10 @@ depends=(
 )
 optdepends=(
   r-biocgenerics
+  r-biocstyle
+  r-knitr
   r-minfidata
+  r-rmarkdown
   r-runit
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")

BioArchLinux/r-epir/PKGBUILD

@@ -4,7 +4,7 @@ _pkgname=epiR
 _pkgver=2.0.58
 pkgname=r-${_pkgname,,}
 pkgver=2.0.58
-pkgrel=1
+pkgrel=2
 pkgdesc='Tools for the Analysis of Epidemiological Data'
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
@@ -20,6 +20,7 @@ depends=(
   r-officer
 )
 optdepends=(
+  r-dplyr
   r-foreign
   r-ggplot2
   r-knitr
@@ -34,7 +35,7 @@ optdepends=(
   r-scales
   r-spatstat
   r-spdata
-  r-tidyverse
+  r-tidyr
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
 sha256sums=('bf1d189f51584252f36c9a2e83915646dddd306ab508f3250a014b5e7216032d')

BioArchLinux/r-ggsci/PKGBUILD

@@ -5,7 +5,7 @@ _pkgname=ggsci
 _pkgver=3.0.0
 pkgname=r-${_pkgname,,}
 pkgver=3.0.0
-pkgrel=1
+pkgrel=2
 pkgdesc="Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'"
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
@@ -18,6 +18,7 @@ depends=(
 optdepends=(
   r-gridextra
   r-knitr
+  r-ragg
   r-reshape2
   r-rmarkdown
 )

BioArchLinux/r-haven/PKGBUILD

@@ -5,7 +5,7 @@ _pkgname=haven
 _pkgver=2.5.2
 pkgname=r-${_pkgname,,}
 pkgver=2.5.2
-pkgrel=1
+pkgrel=2
 pkgdesc="Import and Export 'SPSS', 'Stata' and 'SAS' Files"
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"
@@ -34,6 +34,7 @@ optdepends=(
   r-pillar
   r-rmarkdown
   r-testthat
+  r-utf8
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
 sha256sums=('2131fb0377ae1beffae54bf4beb8b3a876e9b6b9841a5acc39a2a2615023561d')

BioArchLinux/r-hmisc/PKGBUILD

@@ -4,7 +4,7 @@ _pkgname=Hmisc
 _pkgver=5.0-0
 pkgname=r-${_pkgname,,}
 pkgver=5.0.0
-pkgrel=1
+pkgrel=2
 pkgdesc='Harrell Miscellaneous'
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"
@@ -20,16 +20,26 @@ depends=(
   r-gtable
   r-htmltable
   r-htmltools
+  r-knitr
   r-latticeextra
+  r-rmarkdown
   r-viridis
 )
 optdepends=(
+  r-abind
   r-acepack
   r-chron
-  r-knitr
+  r-digest
+  r-kableextra
+  r-leaps
   r-mice
+  r-parallel
+  r-pcapp
   r-plotly
   r-plyr
+  r-polspline
+  r-qreport
+  r-rio
   r-rlang
   r-rms
   r-rstudioapi

BioArchLinux/r-hmisc/lilac.yaml

@@ -12,7 +12,9 @@ repo_depends:
 - r-gtable
 - r-htmltable
 - r-htmltools
+- r-knitr
 - r-latticeextra
+- r-rmarkdown
 - r-viridis
 update_on:
 - regex: Hmisc_([\d._-]+).tar.gz

BioArchLinux/r-officer/PKGBUILD

@@ -4,7 +4,7 @@ _pkgname=officer
 _pkgver=0.6.0
 pkgname=r-${_pkgname,,}
 pkgver=0.6.0
-pkgrel=3
+pkgrel=4
 pkgdesc='Manipulation of Microsoft Word and PowerPoint Documents'
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
@@ -13,6 +13,7 @@ depends=(
   r
   r-openssl
   r-r6
+  r-ragg
   r-uuid
   r-xml2
   r-zip

BioArchLinux/r-officer/lilac.yaml

@@ -5,6 +5,7 @@ maintainers:
 repo_depends:
 - r-openssl
 - r-r6
+- r-ragg
 - r-uuid
 - r-xml2
 - r-zip

BioArchLinux/r-vcdextra/PKGBUILD

@@ -4,7 +4,7 @@ _pkgname=vcdExtra
 _pkgver=0.8-2
 pkgname=r-${_pkgname,,}
 pkgver=0.8.2
-pkgrel=3
+pkgrel=4
 pkgdesc="'vcd' Extensions and Additions"
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
@@ -12,7 +12,14 @@ license=('GPL')
 depends=(
   r
   r-ca
+  r-dplyr
+  r-glue
   r-gnm
+  r-here
+  r-purrr
+  r-readxl
+  r-stringr
+  r-tidyr
   r-vcd
 )
 optdepends=(

BioArchLinux/r-vcdextra/lilac.yaml

@@ -3,7 +3,14 @@ maintainers:
 - github: sukanka
 repo_depends:
 - r-ca
+- r-dplyr
+- r-glue
 - r-gnm
+- r-here
+- r-purrr
+- r-readxl
+- r-stringr
+- r-tidyr
 - r-vcd
 update_on:
 - regex: vcdExtra_([\d._-]+).tar.gz