From 3cc4d8b2b6f27ccc82b4144c91f22e85e09ec60d Mon Sep 17 00:00:00 2001
From: Kuoi <kuoi@bioarchlinux.org>
Date: Sat, 13 May 2023 00:17:12 +0800
Subject: [PATCH] abyss: add lib link

---
 BioArchLinux/abyss/PKGBUILD | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/BioArchLinux/abyss/PKGBUILD b/BioArchLinux/abyss/PKGBUILD
index 0b7aa7f0d9..3c1536662c 100644
--- a/BioArchLinux/abyss/PKGBUILD
+++ b/BioArchLinux/abyss/PKGBUILD
@@ -9,10 +9,11 @@ pkgdesc="Assembly By Short Sequences - a de novo, parallel, paired-end sequence
 arch=("i686" "x86_64")
 url="https://github.com/bcgsc/abyss"
 license=("GPL3")
-depends=("openmpi" "samtools")
+depends=("openmpi" "make")
 makedepends=("boost" "sparsehash" "make" "btllib")
 optdepends=(
   'pigz: for parallel gzip'
+  'samtools: for reading SAM files'
 )
 source=("$pkgname-$pkgver.tar.gz::https://github.com/bcgsc/abyss/archive/$pkgver.tar.gz")
 sha512sums=('1853e2d4d577abf7d0e8ce70e944846e5ad67afcd1f0a1a4b9944047c7e8ebc1dbdd8639b9d99d4b8ce5c84c8fa42638bb16bf02825e9c660bcac133662ec553')
@@ -20,7 +21,7 @@ sha512sums=('1853e2d4d577abf7d0e8ce70e944846e5ad67afcd1f0a1a4b9944047c7e8ebc1dbd
 build() {
   cd "${pkgname}-${pkgver}"
   ./autogen.sh
-  ./configure --prefix=/usr --with-boost=/usr/lib --with-mpi=/usr/lib/openmpi --with-sparsehash=/usr/lib --without-sqlite --disable-werror
+  ./configure --prefix=/usr --with-boost=/usr/lib --with-mpi=/usr/lib/openmpi --with-sparsehash=/usr/lib --with-btllib=/usr/lib --without-sqlite --disable-werror
   make
 }