add mrbayes

mrbayes/PKGBUILD

@@ -0,0 +1,33 @@
+# Original: Abhishek Dasgupta <abhidg@gmail.com>
+# Maintainer: Stunts <f.pinamartins@gmail.com>
+pkgname=mrbayes
+_up_pkgname=MrBayes
+pkgver=3.2.7
+pkgrel=1
+provides=("mrbayes")
+pkgdesc="A program for the Bayesian estimation of phylogeny"
+arch=('i686' 'x86_64')
+license=('GPL')
+url="http://nbisweden.github.io/MrBayes/"
+depends=('readline')
+optdepends=('beagle-lib: for using GPU calculations among other enhancements - rebuild package after installing this dep')
+source=(https://github.com/NBISweden/MrBayes/archive/v${pkgver}.tar.gz)
+sha256sums=('64da39c01f606d0413ce90a1dd3c1ce2cbdef4cbad99aee8a4b2391a2e8db244')
+
+build() {
+  cd ${srcdir}/${_up_pkgname}-${pkgver}
+  #Build with beagle-lib support if available:
+  if [ -f /usr/lib/libhmsbeagle.so ]
+  then
+    msg "beagle-lib found! Building with CUDA support."
+    ./configure --with-beagle=/usr --prefix=${pkgdir}/usr
+  else
+    msg "beagle-lib not found! Building without CUDA support."
+    ./configure --with-beagle=no --prefix=${pkgdir}/usr
+  fi
+  make
+}
+package() {
+  cd ${srcdir}/${_up_pkgname}-${pkgver}
+  make install
+}

mrbayes/lilac.py

@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()

mrbayes/lilac.yaml

@@ -0,0 +1,8 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: github
+    github: NBISweden/MrBayes
+    use_latest_release: true