From 3f22f23a40a8177424ad28f3054e694eae6fd673 Mon Sep 17 00:00:00 2001 From: Sukanka Date: Sat, 4 Jun 2022 00:23:48 +0800 Subject: [PATCH] add deps for jaspBsts --- BioArchLinux/r-boom/PKGBUILD | 30 ++++++++++++++++++++++ BioArchLinux/r-boom/lilac.py | 12 +++++++++ BioArchLinux/r-boom/lilac.yaml | 7 ++++++ BioArchLinux/r-boomspikeslab/PKGBUILD | 33 +++++++++++++++++++++++++ BioArchLinux/r-boomspikeslab/lilac.py | 12 +++++++++ BioArchLinux/r-boomspikeslab/lilac.yaml | 9 +++++++ BioArchLinux/r-bsts/PKGBUILD | 33 +++++++++++++++++++++++++ BioArchLinux/r-bsts/lilac.py | 12 +++++++++ BioArchLinux/r-bsts/lilac.yaml | 12 +++++++++ 9 files changed, 160 insertions(+) create mode 100644 BioArchLinux/r-boom/PKGBUILD create mode 100644 BioArchLinux/r-boom/lilac.py create mode 100644 BioArchLinux/r-boom/lilac.yaml create mode 100644 BioArchLinux/r-boomspikeslab/PKGBUILD create mode 100644 BioArchLinux/r-boomspikeslab/lilac.py create mode 100644 BioArchLinux/r-boomspikeslab/lilac.yaml create mode 100644 BioArchLinux/r-bsts/PKGBUILD create mode 100644 BioArchLinux/r-bsts/lilac.py create mode 100644 BioArchLinux/r-bsts/lilac.yaml diff --git a/BioArchLinux/r-boom/PKGBUILD b/BioArchLinux/r-boom/PKGBUILD new file mode 100644 index 0000000000..3b28fd81c9 --- /dev/null +++ b/BioArchLinux/r-boom/PKGBUILD @@ -0,0 +1,30 @@ +# system requirements: GNU Make, C++11 +# Maintainer: sukanka + +_pkgname=Boom +_pkgver=0.9.10 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//[:-]/.} +pkgrel=1 +pkgdesc='Bayesian Object Oriented Modeling' +arch=('x86_64') +url="https://cran.r-project.org/package=${_pkgname}" +license=('LGPL') +depends=( + r +) +optdepends=( + r-testthat +) +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('403c1df9e3adbdf79b393c04cccfe99e6fbda352cce340eb5e2e65bcc61fa1f0') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: diff --git a/BioArchLinux/r-boom/lilac.py b/BioArchLinux/r-boom/lilac.py new file mode 100644 index 0000000000..620556bc87 --- /dev/null +++ b/BioArchLinux/r-boom/lilac.py @@ -0,0 +1,12 @@ +#!/usr/bin/env python3 +from lilaclib import * + +def pre_build(): + for line in edit_file('PKGBUILD'): + if line.startswith('_pkgver='): + line = f'_pkgver={_G.newver}' + print(line) + update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.')) + +def post_build(): + git_pkgbuild_commit() diff --git a/BioArchLinux/r-boom/lilac.yaml b/BioArchLinux/r-boom/lilac.yaml new file mode 100644 index 0000000000..be49153e77 --- /dev/null +++ b/BioArchLinux/r-boom/lilac.yaml @@ -0,0 +1,7 @@ +build_prefix: extra-x86_64 +maintainers: + - github: sukanka +update_on: + - regex: Boom_([\d._-]+).tar.gz + source: regex + url: https://cran.r-project.org/package=Boom diff --git a/BioArchLinux/r-boomspikeslab/PKGBUILD b/BioArchLinux/r-boomspikeslab/PKGBUILD new file mode 100644 index 0000000000..f9f12ec4ea --- /dev/null +++ b/BioArchLinux/r-boomspikeslab/PKGBUILD @@ -0,0 +1,33 @@ +# Maintainer: sukanka + +_pkgname=BoomSpikeSlab +_pkgver=1.2.5 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//[:-]/.} +pkgrel=1 +pkgdesc='MCMC for Spike and Slab Regression' +arch=('x86_64') +url="https://cran.r-project.org/package=${_pkgname}" +license=('LGPL') +depends=( + r + r-boom +) +optdepends=( + r-igraph + r-mass + r-mlbench + r-testthat +) +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('bc88ad95075b91799476e9e56281e4bf421106601acdbee5de783c9048b22bf8') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: diff --git a/BioArchLinux/r-boomspikeslab/lilac.py b/BioArchLinux/r-boomspikeslab/lilac.py new file mode 100644 index 0000000000..620556bc87 --- /dev/null +++ b/BioArchLinux/r-boomspikeslab/lilac.py @@ -0,0 +1,12 @@ +#!/usr/bin/env python3 +from lilaclib import * + +def pre_build(): + for line in edit_file('PKGBUILD'): + if line.startswith('_pkgver='): + line = f'_pkgver={_G.newver}' + print(line) + update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.')) + +def post_build(): + git_pkgbuild_commit() diff --git a/BioArchLinux/r-boomspikeslab/lilac.yaml b/BioArchLinux/r-boomspikeslab/lilac.yaml new file mode 100644 index 0000000000..2542dab2a1 --- /dev/null +++ b/BioArchLinux/r-boomspikeslab/lilac.yaml @@ -0,0 +1,9 @@ +build_prefix: extra-x86_64 +maintainers: + - github: sukanka +repo_depends: + - r-boom +update_on: + - regex: BoomSpikeSlab_([\d._-]+).tar.gz + source: regex + url: https://cran.r-project.org/package=BoomSpikeSlab diff --git a/BioArchLinux/r-bsts/PKGBUILD b/BioArchLinux/r-bsts/PKGBUILD new file mode 100644 index 0000000000..6b8c3a2d5c --- /dev/null +++ b/BioArchLinux/r-bsts/PKGBUILD @@ -0,0 +1,33 @@ +# Maintainer: sukanka + +_pkgname=bsts +_pkgver=0.9.8 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//[:-]/.} +pkgrel=1 +pkgdesc='Bayesian Structural Time Series' +arch=('x86_64') +url="https://cran.r-project.org/package=${_pkgname}" +license=('LGPL') +depends=( + r + r-boom + r-boomspikeslab + r-xts + r-zoo +) +optdepends=( + r-testthat +) +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('8c8ef3cd2bdb6d23fe72c74971ceb88847d215091bdc76fae3765f9b99430090') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: diff --git a/BioArchLinux/r-bsts/lilac.py b/BioArchLinux/r-bsts/lilac.py new file mode 100644 index 0000000000..620556bc87 --- /dev/null +++ b/BioArchLinux/r-bsts/lilac.py @@ -0,0 +1,12 @@ +#!/usr/bin/env python3 +from lilaclib import * + +def pre_build(): + for line in edit_file('PKGBUILD'): + if line.startswith('_pkgver='): + line = f'_pkgver={_G.newver}' + print(line) + update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.')) + +def post_build(): + git_pkgbuild_commit() diff --git a/BioArchLinux/r-bsts/lilac.yaml b/BioArchLinux/r-bsts/lilac.yaml new file mode 100644 index 0000000000..cdbe98deba --- /dev/null +++ b/BioArchLinux/r-bsts/lilac.yaml @@ -0,0 +1,12 @@ +build_prefix: extra-x86_64 +maintainers: + - github: sukanka +repo_depends: + - r-boom + - r-boomspikeslab + - r-xts + - r-zoo +update_on: + - regex: bsts_([\d._-]+).tar.gz + source: regex + url: https://cran.r-project.org/package=bsts