BioArchLinux/Packages
2
0
Fork 0
mirror of https://github.com/BioArchLinux/Packages.git synced 2025-03-10 12:02:42 +00:00
Code Issues Projects Releases Packages Wiki Activity

r-*: refresh depends and opt depends

Browse source
This commit is contained in:
sukanka 2023-02-09 20:56:37 +08:00 • committed by kbipinkumar
parent 12dc3c4855
commit 3f2e9dfd76
70 changed files with 159 additions and 142 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

4
BioArchLinux/r-ade4/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=ade4
_pkgver=1.7-20 _pkgver=1.7-20
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.7.20 pkgver=1.7.20
pkgrel=1 pkgrel=2
pkgdesc='Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences' pkgdesc='Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -12,6 +12,8 @@ license=('GPL')
depends=( depends=(
r r
r-pixmap r-pixmap
r-rcpp
r-rcpparmadillo
r-sp r-sp
) )
optdepends=( optdepends=(

2
BioArchLinux/r-ade4/lilac.yaml
View file

@ -4,6 +4,8 @@ maintainers:
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
repo_depends: repo_depends:
- r-pixmap - r-pixmap
- r-rcpp
- r-rcpparmadillo
- r-sp - r-sp
update_on: update_on:
- regex: ade4_([\d._-]+).tar.gz - regex: ade4_([\d._-]+).tar.gz

8
BioArchLinux/r-biocancer/PKGBUILD
View file

@ -4,14 +4,13 @@ _pkgname=bioCancer
_pkgver=1.26.04 _pkgver=1.26.04
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.26.04 pkgver=1.26.04
pkgrel=1 pkgrel=2
pkgdesc='Interactive Multi-Omics Cancers Data Visualization and Analysis' pkgdesc='Interactive Multi-Omics Cancers Data Visualization and Analysis'
arch=('any') arch=('any')
url="https://bioconductor.org/packages/${_pkgname}" url="https://bioconductor.org/packages/${_pkgname}"
license=('AGPL') license=('AGPL')
depends=( depends=(
r r
r-algdesign
r-annotationdbi r-annotationdbi
r-biobase r-biobase
r-clusterprofiler r-clusterprofiler
@ -20,20 +19,15 @@ depends=(
r-dplyr r-dplyr
r-dt r-dt
r-genetclassifier r-genetclassifier
r-go.db
r-htmlwidgets r-htmlwidgets
r-httr r-httr
r-import
r-org.bt.eg.db
r-org.hs.eg.db r-org.hs.eg.db
r-plyr r-plyr
r-r.methodss3
r-r.oo r-r.oo
r-radiant.data r-radiant.data
r-reactome.db r-reactome.db
r-reactomepa r-reactomepa
r-shiny r-shiny
r-shinythemes
r-tibble r-tibble
r-visnetwork r-visnetwork
r-xml r-xml

6
BioArchLinux/r-biocancer/lilac.yaml
View file

@ -3,7 +3,6 @@ maintainers:
- github: starsareintherose - github: starsareintherose
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
repo_depends: repo_depends:
- r-algdesign
- r-annotationdbi - r-annotationdbi
- r-biobase - r-biobase
- r-clusterprofiler - r-clusterprofiler
@ -12,20 +11,15 @@ repo_depends:
- r-dplyr - r-dplyr
- r-dt - r-dt
- r-genetclassifier - r-genetclassifier
- r-go.db
- r-htmlwidgets - r-htmlwidgets
- r-httr - r-httr
- r-import
- r-org.bt.eg.db
- r-org.hs.eg.db - r-org.hs.eg.db
- r-plyr - r-plyr
- r-r.methodss3
- r-r.oo - r-r.oo
- r-radiant.data - r-radiant.data
- r-reactome.db - r-reactome.db
- r-reactomepa - r-reactomepa
- r-shiny - r-shiny
- r-shinythemes
- r-tibble - r-tibble
- r-visnetwork - r-visnetwork
- r-xml - r-xml

3
BioArchLinux/r-bsgenome.hsapiens.ucsc.hg38/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=BSgenome.Hsapiens.UCSC.hg38
_pkgver=1.4.5 _pkgver=1.4.5
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.4.5 pkgver=1.4.5
pkgrel=1 pkgrel=2
pkgdesc='Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p13)' pkgdesc='Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p13)'
arch=('any') arch=('any')
url="https://bioconductor.org/packages/${_pkgname}" url="https://bioconductor.org/packages/${_pkgname}"
@ -12,6 +12,7 @@ license=('Artistic2.0')
depends=( depends=(
r r
r-bsgenome r-bsgenome
r-genomeinfodb
) )
source=("https://bioconductor.org/packages/release/data/annotation/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://bioconductor.org/packages/release/data/annotation/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('b49277e4fd955be76571f187630993b02a459c7c5b69ef62a01a75dd5226e952') sha256sums=('b49277e4fd955be76571f187630993b02a459c7c5b69ef62a01a75dd5226e952')

1
BioArchLinux/r-bsgenome.hsapiens.ucsc.hg38/lilac.yaml
View file

@ -4,6 +4,7 @@ maintainers:
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
repo_depends: repo_depends:
- r-bsgenome - r-bsgenome
- r-genomeinfodb
update_on: update_on:
- regex: BSgenome.Hsapiens.UCSC.hg38_([\d._-]+).tar.gz - regex: BSgenome.Hsapiens.UCSC.hg38_([\d._-]+).tar.gz
source: regex source: regex

3
BioArchLinux/r-c50/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=C50
_pkgver=0.1.8 _pkgver=0.1.8
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.1.8 pkgver=0.1.8
pkgrel=1 pkgrel=2
pkgdesc='C5.0 Decision Trees and Rule-Based Models' pkgdesc='C5.0 Decision Trees and Rule-Based Models'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -19,6 +19,7 @@ optdepends=(
r-knitr r-knitr
r-modeldata r-modeldata
r-rmarkdown r-rmarkdown
r-testthat
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('bbd1bd5ed0ed5257529396697bea2a5841c8159470ba09d2066411d4aeda9c15') sha256sums=('bbd1bd5ed0ed5257529396697bea2a5841c8159470ba09d2066411d4aeda9c15')

4
BioArchLinux/r-caretensemble/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=caretEnsemble
_pkgver=2.0.2 _pkgver=2.0.2
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=2.0.2 pkgver=2.0.2
pkgrel=1 pkgrel=2
pkgdesc='Ensembles of Caret Models' pkgdesc='Ensembles of Caret Models'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -36,7 +36,9 @@ optdepends=(
r-randomforest r-randomforest
r-rmarkdown r-rmarkdown
r-rpart r-rpart
r-sass
r-testthat r-testthat
r-usethis
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('d8fcf3742beddc723b68677682708408cc11dcb8b36a0f70f03e7c4763e04f4d') sha256sums=('d8fcf3742beddc723b68677682708408cc11dcb8b36a0f70f03e7c4763e04f4d')

13
BioArchLinux/r-cetf/PKGBUILD
View file

@ -5,19 +5,23 @@ _pkgname=CeTF
_pkgver=1.10.2 _pkgver=1.10.2
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.10.2 pkgver=1.10.2
pkgrel=1 pkgrel=2
pkgdesc='Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis' pkgdesc='Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis'
arch=('x86_64') arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}" url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL') license=('GPL')
depends=( depends=(
curl
gcc-fortran
libxml2
openssl
r r
zlib
r-circlize r-circlize
r-clusterprofiler r-clusterprofiler
r-complexheatmap r-complexheatmap
r-deseq2 r-deseq2
r-dplyr r-dplyr
r-genomictools
r-genomictools.filehandler r-genomictools.filehandler
r-ggally r-ggally
r-ggnetwork r-ggnetwork
@ -31,11 +35,6 @@ depends=(
r-rcy3 r-rcy3
r-s4vectors r-s4vectors
r-summarizedexperiment r-summarizedexperiment
libxml2
gcc-fortran
curl
openssl
zlib
) )
optdepends=( optdepends=(
r-airway r-airway

1
BioArchLinux/r-cetf/lilac.yaml
View file

@ -8,7 +8,6 @@ repo_depends:
- r-complexheatmap - r-complexheatmap
- r-deseq2 - r-deseq2
- r-dplyr - r-dplyr
- r-genomictools
- r-genomictools.filehandler - r-genomictools.filehandler
- r-ggally - r-ggally
- r-ggnetwork - r-ggnetwork

3
BioArchLinux/r-clusterr/PKGBUILD
View file

@ -5,7 +5,7 @@ _pkgname=ClusterR
_pkgver=1.3.0 _pkgver=1.3.0
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.3.0 pkgver=1.3.0
pkgrel=1 pkgrel=2
pkgdesc='Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering' pkgdesc='Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -15,7 +15,6 @@ depends=(
r r
r-ggplot2 r-ggplot2
r-gmp r-gmp
r-gtools
r-lifecycle r-lifecycle
r-rcpp r-rcpp
r-rcpparmadillo r-rcpparmadillo

1
BioArchLinux/r-clusterr/lilac.yaml
View file

@ -5,7 +5,6 @@ maintainers:
repo_depends: repo_depends:
- r-ggplot2 - r-ggplot2
- r-gmp - r-gmp
- r-gtools
- r-lifecycle - r-lifecycle
- r-rcpp - r-rcpp
- r-rcpparmadillo - r-rcpparmadillo

4
BioArchLinux/r-cubist/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=Cubist
_pkgver=0.4.2 _pkgver=0.4.2
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.4.2 pkgver=0.4.2
pkgrel=1 pkgrel=2
pkgdesc='Rule- And Instance-Based Regression Modeling' pkgdesc='Rule- And Instance-Based Regression Modeling'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -14,12 +14,14 @@ depends=(
r-reshape2 r-reshape2
) )
optdepends=( optdepends=(
r-covr
r-dplyr r-dplyr
r-knitr r-knitr
r-mlbench r-mlbench
r-modeldata r-modeldata
r-rlang r-rlang
r-rmarkdown r-rmarkdown
r-testthat
r-tidyrules r-tidyrules
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")

3
BioArchLinux/r-dockerfiler/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=dockerfiler
_pkgver=0.2.1 _pkgver=0.2.1
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.2.1 pkgver=0.2.1
pkgrel=1 pkgrel=2
pkgdesc='Easy Dockerfile Creation from R' pkgdesc='Easy Dockerfile Creation from R'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -28,6 +28,7 @@ optdepends=(
r-knitr r-knitr
r-rmarkdown r-rmarkdown
r-testthat r-testthat
r-withr
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('77cbbb05265b22c7fdd5fba06caf294fc3f02c4f92faefa3102f57d9c6a9bd5a') sha256sums=('77cbbb05265b22c7fdd5fba06caf294fc3f02c4f92faefa3102f57d9c6a9bd5a')

6
BioArchLinux/r-dorng/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=doRNG
_pkgver=1.8.6 _pkgver=1.8.6
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.8.6 pkgver=1.8.6
pkgrel=1 pkgrel=2
pkgdesc="Generic Reproducible Parallel Backend for 'foreach' Loops" pkgdesc="Generic Reproducible Parallel Backend for 'foreach' Loops"
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -16,13 +16,15 @@ depends=(
r-rngtools r-rngtools
) )
optdepends=( optdepends=(
r-bibtex r-covr
r-devtools r-devtools
r-dompi r-dompi
r-doparallel r-doparallel
r-doredis r-doredis
r-knitr r-knitr
r-pkgmaker
r-rbenchmark r-rbenchmark
r-rbibutils
r-testthat r-testthat
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")

4
BioArchLinux/r-dplyr/PKGBUILD
View file

@ -4,13 +4,14 @@ _pkgname=dplyr
_pkgver=1.1.0 _pkgver=1.1.0
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.1.0 pkgver=1.1.0
pkgrel=1 pkgrel=2
pkgdesc='A Grammar of Data Manipulation' pkgdesc='A Grammar of Data Manipulation'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
license=('MIT') license=('MIT')
depends=( depends=(
r r
r-cli
r-generics r-generics
r-glue r-glue
r-lifecycle r-lifecycle
@ -40,6 +41,7 @@ optdepends=(
r-rmysql r-rmysql
r-rpostgresql r-rpostgresql
r-rsqlite r-rsqlite
r-stringi
r-testthat r-testthat
r-tidyr r-tidyr
r-withr r-withr

1
BioArchLinux/r-dplyr/lilac.yaml
View file

@ -3,6 +3,7 @@ maintainers:
- github: starsareintherose - github: starsareintherose
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
repo_depends: repo_depends:
- r-cli
- r-generics - r-generics
- r-glue - r-glue
- r-lifecycle - r-lifecycle

3
BioArchLinux/r-dt/PKGBUILD
View file

@ -6,7 +6,7 @@ _pkgname=DT
_pkgver=0.27 _pkgver=0.27
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.27 pkgver=0.27
pkgrel=1 pkgrel=2
pkgdesc="A Wrapper of the JavaScript Library 'DataTables'" pkgdesc="A Wrapper of the JavaScript Library 'DataTables'"
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -28,6 +28,7 @@ optdepends=(
r-rmarkdown r-rmarkdown
r-shiny r-shiny
r-testit r-testit
r-tibble
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e32fdccd2be430933cff88a9ce79045bfdbe3e08e0cd8d15037445808613289a') sha256sums=('e32fdccd2be430933cff88a9ce79045bfdbe3e08e0cd8d15037445808613289a')

3
BioArchLinux/r-effectsize/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=effectsize
_pkgver=0.8.3 _pkgver=0.8.3
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.8.3 pkgver=0.8.3
pkgrel=1 pkgrel=2
pkgdesc='Indices of Effect Size and Standardized Parameters' pkgdesc='Indices of Effect Size and Standardized Parameters'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -25,6 +25,7 @@ optdepends=(
r-car r-car
r-correlation r-correlation
r-emmeans r-emmeans
r-gt
r-knitr r-knitr
r-lavaan r-lavaan
r-lme4 r-lme4

7
BioArchLinux/r-flextable/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=flextable
_pkgver=0.8.5 _pkgver=0.8.5
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.8.5 pkgver=0.8.5
pkgrel=1 pkgrel=2
pkgdesc='Functions for Tabular Reporting' pkgdesc='Functions for Tabular Reporting'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -32,15 +32,16 @@ optdepends=(
r-equatags r-equatags
r-ggplot2 r-ggplot2
r-lme4 r-lme4
r-locatexec
r-magick r-magick
r-mgcv r-mgcv
r-nlme r-nlme
r-officedown r-officedown
r-pdftools r-pdftools
r-pkgdown
r-ragg
r-scales r-scales
r-testthat r-testthat
r-webshot r-webshot2
r-xtable r-xtable
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")

5
BioArchLinux/r-forcats/PKGBUILD
View file

@ -5,7 +5,7 @@ _pkgname=forcats
_pkgver=1.0.0 _pkgver=1.0.0
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.0.0 pkgver=1.0.0
pkgrel=1 pkgrel=2
pkgdesc='Tools for Working with Categorical Variables (Factors)' pkgdesc='Tools for Working with Categorical Variables (Factors)'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -13,13 +13,11 @@ license=('MIT')
depends=( depends=(
r r
r-cli r-cli
r-ellipsis
r-glue r-glue
r-lifecycle r-lifecycle
r-magrittr r-magrittr
r-rlang r-rlang
r-tibble r-tibble
r-withr
) )
optdepends=( optdepends=(
r-covr r-covr
@ -29,6 +27,7 @@ optdepends=(
r-readr r-readr
r-rmarkdown r-rmarkdown
r-testthat r-testthat
r-withr
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c5bb157909d92e1e1a427c0dc5cb358ea00a43a14918a9088fa4f6630962254e') sha256sums=('c5bb157909d92e1e1a427c0dc5cb358ea00a43a14918a9088fa4f6630962254e')

2
BioArchLinux/r-forcats/lilac.yaml
View file

@ -4,13 +4,11 @@ maintainers:
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
repo_depends: repo_depends:
- r-cli - r-cli
- r-ellipsis
- r-glue - r-glue
- r-lifecycle - r-lifecycle
- r-magrittr - r-magrittr
- r-rlang - r-rlang
- r-tibble - r-tibble
- r-withr
update_on: update_on:
- regex: forcats_([\d._-]+).tar.gz - regex: forcats_([\d._-]+).tar.gz
source: regex source: regex

4
BioArchLinux/r-gap/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=gap
_pkgver=1.5-1 _pkgver=1.5-1
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.5.1 pkgver=1.5.1
pkgrel=1 pkgrel=2
pkgdesc='Genetic Analysis Package' pkgdesc='Genetic Analysis Package'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -18,6 +18,7 @@ depends=(
) )
optdepends=( optdepends=(
r-bdsmatrix r-bdsmatrix
r-bookdown
r-bradleyterry2 r-bradleyterry2
r-calibrate r-calibrate
r-circlize r-circlize
@ -44,7 +45,6 @@ optdepends=(
r-mcmcglmm r-mcmcglmm
r-meta r-meta
r-metafor r-metafor
r-mets
r-nlme r-nlme
r-pedigree r-pedigree
r-pedigreemm r-pedigreemm

3
BioArchLinux/r-ggiraph/PKGBUILD
View file

@ -5,7 +5,7 @@ _pkgname=ggiraph
_pkgver=0.8.6 _pkgver=0.8.6
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.8.6 pkgver=0.8.6
pkgrel=1 pkgrel=2
pkgdesc="Make 'ggplot2' Graphics Interactive" pkgdesc="Make 'ggplot2' Graphics Interactive"
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -28,6 +28,7 @@ depends=(
) )
optdepends=( optdepends=(
r-dplyr r-dplyr
r-gdtools
r-ggrepel r-ggrepel
r-hexbin r-hexbin
r-knitr r-knitr

4
BioArchLinux/r-ggrepel/PKGBUILD
View file

@ -5,7 +5,7 @@ _pkgname=ggrepel
_pkgver=0.9.3 _pkgver=0.9.3
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.9.3 pkgver=0.9.3
pkgrel=1 pkgrel=2
pkgdesc="Automatically Position Non-Overlapping Text Labels with 'ggplot2'" pkgdesc="Automatically Position Non-Overlapping Text Labels with 'ggplot2'"
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -16,6 +16,7 @@ depends=(
r-rcpp r-rcpp
r-rlang r-rlang
r-scales r-scales
r-withr
) )
optdepends=( optdepends=(
r-devtools r-devtools
@ -31,7 +32,6 @@ optdepends=(
r-svglite r-svglite
r-testthat r-testthat
r-vdiffr r-vdiffr
r-withr
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('b9eba0e2edee84db0276b49e4834b65f5369edc4bc56f4cacc13e0d1c39a005c') sha256sums=('b9eba0e2edee84db0276b49e4834b65f5369edc4bc56f4cacc13e0d1c39a005c')

1
BioArchLinux/r-ggrepel/lilac.yaml
View file

@ -7,6 +7,7 @@ repo_depends:
- r-rcpp - r-rcpp
- r-rlang - r-rlang
- r-scales - r-scales
- r-withr
update_on: update_on:
- regex: ggrepel_([\d._-]+).tar.gz - regex: ggrepel_([\d._-]+).tar.gz
source: regex source: regex

3
BioArchLinux/r-hmisc/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=Hmisc
_pkgver=4.8-0 _pkgver=4.8-0
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=4.8.0 pkgver=4.8.0
pkgrel=1 pkgrel=2
pkgdesc='Harrell Miscellaneous' pkgdesc='Harrell Miscellaneous'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -12,6 +12,7 @@ license=('GPL')
depends=( depends=(
r r
r-base64enc r-base64enc
r-colorspace
r-data.table r-data.table
r-formula r-formula
r-ggplot2 r-ggplot2

1
BioArchLinux/r-hmisc/lilac.yaml
View file

@ -4,6 +4,7 @@ maintainers:
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
repo_depends: repo_depends:
- r-base64enc - r-base64enc
- r-colorspace
- r-data.table - r-data.table
- r-formula - r-formula
- r-ggplot2 - r-ggplot2

5
BioArchLinux/r-insight/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=insight
_pkgver=0.19.0 _pkgver=0.19.0
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.19.0 pkgver=0.19.0
pkgrel=1 pkgrel=2
pkgdesc='Easy Access to Model Information for Various Model Objects' pkgdesc='Easy Access to Model Information for Various Model Objects'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -47,6 +47,7 @@ optdepends=(
r-gbm r-gbm
r-gee r-gee
r-geepack r-geepack
r-geor
r-glmmadaptive r-glmmadaptive
r-glmmtmb r-glmmtmb
r-gmnl r-gmnl
@ -75,6 +76,7 @@ optdepends=(
r-mhurdle r-mhurdle
r-mice r-mice
r-mlogit r-mlogit
r-mmrm
r-multgee r-multgee
r-nlme r-nlme
r-nnet r-nnet
@ -104,6 +106,7 @@ optdepends=(
r-survey r-survey
r-survival r-survival
r-testthat r-testthat
r-tmb
r-truncreg r-truncreg
r-tweedie r-tweedie
r-vgam r-vgam

3
BioArchLinux/r-isanalytics/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=ISAnalytics
_pkgver=1.8.1 _pkgver=1.8.1
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.8.1 pkgver=1.8.1
pkgrel=1 pkgrel=2
pkgdesc='Analyze gene therapy vector insertion sites data identified from genomics next generation sequencing reads for clonal tracking studies' pkgdesc='Analyze gene therapy vector insertion sites data identified from genomics next generation sequencing reads for clonal tracking studies'
arch=('any') arch=('any')
url="https://bioconductor.org/packages/${_pkgname}" url="https://bioconductor.org/packages/${_pkgname}"
@ -15,7 +15,6 @@ depends=(
r-data.table r-data.table
r-datamods r-datamods
r-dplyr r-dplyr
r-dt # manually added
r-forcats r-forcats
r-fs r-fs
r-ggplot2 r-ggplot2

1
BioArchLinux/r-isanalytics/lilac.yaml
View file

@ -7,7 +7,6 @@ repo_depends:
- r-data.table - r-data.table
- r-datamods - r-datamods
- r-dplyr - r-dplyr
- r-dt
- r-forcats - r-forcats
- r-fs - r-fs
- r-ggplot2 - r-ggplot2

7
BioArchLinux/r-knitr/PKGBUILD
View file

@ -5,20 +5,19 @@ _pkgname=knitr
_pkgver=1.42 _pkgver=1.42
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.42 pkgver=1.42
pkgrel=1 pkgrel=2
pkgdesc='A General-Purpose Package for Dynamic Report Generation in R' pkgdesc='A General-Purpose Package for Dynamic Report Generation in R'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
license=('GPL') license=('GPL')
depends=( depends=(
pandoc
r r
rst2pdf
r-evaluate r-evaluate
r-highr r-highr
r-stringr
r-xfun r-xfun
r-yaml r-yaml
rst2pdf
pandoc
) )
optdepends=( optdepends=(
r-bslib r-bslib

1
BioArchLinux/r-knitr/lilac.yaml
View file

@ -5,7 +5,6 @@ maintainers:
repo_depends: repo_depends:
- r-evaluate - r-evaluate
- r-highr - r-highr
- r-stringr
- r-xfun - r-xfun
- r-yaml - r-yaml
update_on: update_on:

3
BioArchLinux/r-markdown/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=markdown
_pkgver=1.5 _pkgver=1.5
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.5 pkgver=1.5
pkgrel=1 pkgrel=2
pkgdesc="Render Markdown with the C Library 'Sundown'" pkgdesc="Render Markdown with the C Library 'Sundown'"
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -12,7 +12,6 @@ license=('GPL')
depends=( depends=(
r r
r-commonmark r-commonmark
r-mime
r-xfun r-xfun
) )
optdepends=( optdepends=(

1
BioArchLinux/r-markdown/lilac.yaml
View file

@ -4,7 +4,6 @@ maintainers:
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
repo_depends: repo_depends:
- r-commonmark - r-commonmark
- r-mime
- r-xfun - r-xfun
update_on: update_on:
- regex: markdown_([\d._-]+).tar.gz - regex: markdown_([\d._-]+).tar.gz

3
BioArchLinux/r-martini/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=martini
_pkgver=1.18.1 _pkgver=1.18.1
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.18.1 pkgver=1.18.1
pkgrel=1 pkgrel=2
pkgdesc='GWAS Incorporating Networks' pkgdesc='GWAS Incorporating Networks'
arch=('x86_64') arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}" url="https://bioconductor.org/packages/${_pkgname}"
@ -23,7 +23,6 @@ optdepends=(
r-httr r-httr
r-iranges r-iranges
r-knitr r-knitr
r-memoise
r-readr r-readr
r-rmarkdown r-rmarkdown
r-s4vectors r-s4vectors

3
BioArchLinux/r-officer/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=officer
_pkgver=0.5.2 _pkgver=0.5.2
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.5.2 pkgver=0.5.2
pkgrel=1 pkgrel=2
pkgdesc='Manipulation of Microsoft Word and PowerPoint Documents' pkgdesc='Manipulation of Microsoft Word and PowerPoint Documents'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -23,6 +23,7 @@ optdepends=(
r-doconv r-doconv
r-ggplot2 r-ggplot2
r-knitr r-knitr
r-magick
r-rmarkdown r-rmarkdown
r-rsvg r-rsvg
r-testthat r-testthat

5
BioArchLinux/r-parameters/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=parameters
_pkgver=0.20.2 _pkgver=0.20.2
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.20.2 pkgver=0.20.2
pkgrel=1 pkgrel=2
pkgdesc='Processing of Model Parameters' pkgdesc='Processing of Model Parameters'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -73,7 +73,6 @@ optdepends=(
r-logspline r-logspline
r-lqmm r-lqmm
r-m3c r-m3c
r-magrittr
r-marginaleffects r-marginaleffects
r-mass r-mass
r-matrix r-matrix
@ -86,6 +85,7 @@ optdepends=(
r-mfx r-mfx
r-mgcv r-mgcv
r-mice r-mice
r-mmrm
r-multcomp r-multcomp
r-mumin r-mumin
r-nbclust r-nbclust
@ -111,7 +111,6 @@ optdepends=(
r-rmarkdown r-rmarkdown
r-rms r-rms
r-rstanarm r-rstanarm
r-rsvd
r-sandwich r-sandwich
r-see r-see
r-sparsepca r-sparsepca

4
BioArchLinux/r-pbapply/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=pbapply
_pkgver=1.7-0 _pkgver=1.7-0
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.7.0 pkgver=1.7.0
pkgrel=1 pkgrel=2
pkgdesc="Adding Progress Bar to '*apply' Functions" pkgdesc="Adding Progress Bar to '*apply' Functions"
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -13,6 +13,8 @@ depends=(
r r
) )
optdepends=( optdepends=(
r-future
r-future.apply
r-shiny r-shiny
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")

7
BioArchLinux/r-pbkrtest/PKGBUILD
View file

@ -6,7 +6,7 @@ _pkgname=pbkrtest
_pkgver=0.5.2 _pkgver=0.5.2
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.5.2 pkgver=0.5.2
pkgrel=1 pkgrel=2
pkgdesc='Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models' pkgdesc='Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -15,11 +15,12 @@ depends=(
r r
r-broom r-broom
r-dplyr r-dplyr
r-knitr
r-lme4 r-lme4
r-magrittr
r-numderiv r-numderiv
) )
optdepends=(
r-knitr
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('8e79adf035a0fcf3c82145ad55847497379e009f7be880ba3007ebeb2e69b6e3') sha256sums=('8e79adf035a0fcf3c82145ad55847497379e009f7be880ba3007ebeb2e69b6e3')

2
BioArchLinux/r-pbkrtest/lilac.yaml
View file

@ -5,9 +5,7 @@ maintainers:
repo_depends: repo_depends:
- r-broom - r-broom
- r-dplyr - r-dplyr
- r-knitr
- r-lme4 - r-lme4
- r-magrittr
- r-numderiv - r-numderiv
update_on: update_on:
- regex: pbkrtest_([\d._-]+).tar.gz - regex: pbkrtest_([\d._-]+).tar.gz

4
BioArchLinux/r-performance/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=performance
_pkgver=0.10.2 _pkgver=0.10.2
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.10.2 pkgver=0.10.2
pkgrel=1 pkgrel=2
pkgdesc='Assessment of Regression Models Performance' pkgdesc='Assessment of Regression Models Performance'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -37,6 +37,7 @@ optdepends=(
r-ggplot2 r-ggplot2
r-glmmtmb r-glmmtmb
r-graphics r-graphics
r-hmisc
r-httr r-httr
r-ics r-ics
r-icsoutlier r-icsoutlier
@ -45,7 +46,6 @@ optdepends=(
r-lme4 r-lme4
r-lmtest r-lmtest
r-loo r-loo
r-magrittr
r-mass r-mass
r-matrix r-matrix
r-mclust r-mclust

3
BioArchLinux/r-phangorn/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=phangorn
_pkgver=2.11.1 _pkgver=2.11.1
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=2.11.1 pkgver=2.11.1
pkgrel=1 pkgrel=2
pkgdesc='Phylogenetic Reconstruction and Analysis' pkgdesc='Phylogenetic Reconstruction and Analysis'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -23,7 +23,6 @@ optdepends=(
r-biostrings r-biostrings
r-knitr r-knitr
r-magick r-magick
r-prettydoc
r-rgl r-rgl
r-rmarkdown r-rmarkdown
r-seqinr r-seqinr

4
BioArchLinux/r-pkgmaker/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=pkgmaker
_pkgver=0.32.2 _pkgver=0.32.2
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.32.2 pkgver=0.32.2
pkgrel=7 pkgrel=8
pkgdesc='Development Utilities for R Packages' pkgdesc='Development Utilities for R Packages'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -31,7 +31,7 @@ optdepends=(
r-testthat r-testthat
r-yaml r-yaml
) )
source=("https://cran.r-project.org/src/contrib/Archive/${_pkgname}/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ce45b22def771a9c90a414093823e6befe7e23489c500eeccee5154b44d3ef91') sha256sums=('ce45b22def771a9c90a414093823e6befe7e23489c500eeccee5154b44d3ef91')
build() { build() {

2
BioArchLinux/r-pkgmaker/lilac.yaml
View file

@ -12,5 +12,5 @@ repo_depends:
update_on: update_on:
- regex: pkgmaker_([\d._-]+).tar.gz - regex: pkgmaker_([\d._-]+).tar.gz
source: regex source: regex
url: https://cran.r-project.org/src/contrib/Archive/pkgmaker url: https://cran.r-project.org/package=pkgmaker
- alias: r - alias: r

5
BioArchLinux/r-precrec/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=precrec
_pkgver=0.14.1 _pkgver=0.14.1
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.14.1 pkgver=0.14.1
pkgrel=1 pkgrel=2
pkgdesc='Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves' pkgdesc='Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -16,12 +16,15 @@ depends=(
r-ggplot2 r-ggplot2
r-gridextra r-gridextra
r-rcpp r-rcpp
r-rlang
r-withr r-withr
) )
optdepends=( optdepends=(
r-knitr r-knitr
r-patchwork
r-rmarkdown r-rmarkdown
r-testthat r-testthat
r-vdiffr
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a81be3001ad25ff8d2dfff29390a08008875e0b4e4a8e398e37f8d4b18c7fe12') sha256sums=('a81be3001ad25ff8d2dfff29390a08008875e0b4e4a8e398e37f8d4b18c7fe12')

1
BioArchLinux/r-precrec/lilac.yaml
View file

@ -8,6 +8,7 @@ repo_depends:
- r-ggplot2 - r-ggplot2
- r-gridextra - r-gridextra
- r-rcpp - r-rcpp
- r-rlang
- r-withr - r-withr
update_on: update_on:
- regex: precrec_([\d._-]+).tar.gz - regex: precrec_([\d._-]+).tar.gz

3
BioArchLinux/r-progressr/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=progressr
_pkgver=0.13.0 _pkgver=0.13.0
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.13.0 pkgver=0.13.0
pkgrel=1 pkgrel=2
pkgdesc='An Inclusive, Unifying API for Progress Updates' pkgdesc='An Inclusive, Unifying API for Progress Updates'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -29,6 +29,7 @@ optdepends=(
r-plyr r-plyr
r-progress r-progress
r-purrr r-purrr
r-rpushbullet
r-rstudioapi r-rstudioapi
r-shiny r-shiny
r-tcltk r-tcltk

3
BioArchLinux/r-prostar/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=Prostar
_pkgver=1.30.3 _pkgver=1.30.3
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.30.3 pkgver=1.30.3
pkgrel=1 pkgrel=2
pkgdesc='Provides a GUI for DAPAR' pkgdesc='Provides a GUI for DAPAR'
arch=('any') arch=('any')
url="https://bioconductor.org/packages/${_pkgname}" url="https://bioconductor.org/packages/${_pkgname}"
@ -41,6 +41,7 @@ optdepends=(
r-gtools r-gtools
r-knitr r-knitr
r-r.utils r-r.utils
r-rclipboard
r-rcolorbrewer r-rcolorbrewer
r-sass r-sass
r-shinytree r-shinytree

5
BioArchLinux/r-questionr/PKGBUILD
View file

@ -5,22 +5,23 @@ _pkgname=questionr
_pkgver=0.7.8 _pkgver=0.7.8
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.7.8 pkgver=0.7.8
pkgrel=1 pkgrel=2
pkgdesc='Functions to Make Surveys Processing Easier' pkgdesc='Functions to Make Surveys Processing Easier'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
license=('GPL') license=('GPL')
depends=( depends=(
r r
xclip
r-classint r-classint
r-highr r-highr
r-htmltools r-htmltools
r-labelled r-labelled
r-miniui r-miniui
r-rlang
r-rstudioapi r-rstudioapi
r-shiny r-shiny
r-styler r-styler
xclip
) )
optdepends=( optdepends=(
r-dplyr r-dplyr

1
BioArchLinux/r-questionr/lilac.yaml
View file

@ -8,6 +8,7 @@ repo_depends:
- r-htmltools - r-htmltools
- r-labelled - r-labelled
- r-miniui - r-miniui
- r-rlang
- r-rstudioapi - r-rstudioapi
- r-shiny - r-shiny
- r-styler - r-styler

3
BioArchLinux/r-rcppalgos/PKGBUILD
View file

@ -5,7 +5,7 @@ _pkgname=RcppAlgos
_pkgver=2.7.1 _pkgver=2.7.1
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=2.7.1 pkgver=2.7.1
pkgrel=1 pkgrel=2
pkgdesc='High Performance Tools for Combinatorics and Computational Mathematics' pkgdesc='High Performance Tools for Combinatorics and Computational Mathematics'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -18,7 +18,6 @@ depends=(
optdepends=( optdepends=(
r-knitr r-knitr
r-microbenchmark r-microbenchmark
r-numbers
r-partitions r-partitions
r-rcppbigintalgos r-rcppbigintalgos
r-rmarkdown r-rmarkdown

4
BioArchLinux/r-readxl/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=readxl
_pkgver=1.4.2 _pkgver=1.4.2
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.4.2 pkgver=1.4.2
pkgrel=1 pkgrel=2
pkgdesc='Read Excel Files' pkgdesc='Read Excel Files'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -17,9 +17,11 @@ depends=(
r-tibble r-tibble
) )
optdepends=( optdepends=(
r-covr
r-knitr r-knitr
r-rmarkdown r-rmarkdown
r-testthat r-testthat
r-withr
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('387304e2c5be0dca4861ec0232f0d92cc1882b660ca917f8f2a8a4ae858aba11') sha256sums=('387304e2c5be0dca4861ec0232f0d92cc1882b660ca917f8f2a8a4ae858aba11')

5
BioArchLinux/r-report/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=report
_pkgver=0.5.5 _pkgver=0.5.5
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.5.5 pkgver=0.5.5
pkgrel=3 pkgrel=4
pkgdesc='Automated Reporting of Results and Statistical Models' pkgdesc='Automated Reporting of Results and Statistical Models'
arch=('any') arch=('any')
url="https://github.com/easystats/report" url="https://github.com/easystats/report"
@ -19,7 +19,6 @@ depends=(
r-performance r-performance
) )
optdepends=( optdepends=(
r-bayesfactor
r-brms r-brms
r-dplyr r-dplyr
r-ivreg r-ivreg
@ -31,7 +30,7 @@ optdepends=(
r-survival r-survival
r-testthat r-testthat
) )
source=("${_pkgname}_${pkgver}.tar.gz::https://github.com/easystats/report/archive/refs/tags/${pkgver}.tar.gz") source=("${_pkgname}_${pkgver}.tar.gz::${url}/archive/refs/tags/${pkgver}.tar.gz")
sha256sums=('4a6ae6cb6690a37b654d52d7ea5b25872655bb9a8d250ea934437a7fde74e829') sha256sums=('4a6ae6cb6690a37b654d52d7ea5b25872655bb9a8d250ea934437a7fde74e829')
build() { build() {

1
BioArchLinux/r-report/lilac.yaml
View file

@ -12,3 +12,4 @@ update_on:
- source: github - source: github
github: easystats/report github: easystats/report
use_max_tag: true use_max_tag: true
prefix: v

3
BioArchLinux/r-rmarkdown/PKGBUILD
View file

@ -5,7 +5,7 @@ _pkgname=rmarkdown
_pkgver=2.20 _pkgver=2.20
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=2.20 pkgver=2.20
pkgrel=1 pkgrel=2
pkgdesc='Dynamic Documents for R' pkgdesc='Dynamic Documents for R'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -34,7 +34,6 @@ optdepends=(
r-shiny r-shiny
r-testthat r-testthat
r-tibble r-tibble
r-tufte
r-vctrs r-vctrs
r-withr r-withr
) )

4
BioArchLinux/r-rmpfr/PKGBUILD
View file

@ -5,7 +5,7 @@ _pkgname=Rmpfr
_pkgver=0.9-1 _pkgver=0.9-1
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.9.1 pkgver=0.9.1
pkgrel=1 pkgrel=2
pkgdesc='R MPFR - Multiple Precision Floating-Point Reliable' pkgdesc='R MPFR - Multiple Precision Floating-Point Reliable'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -17,8 +17,8 @@ depends=(
optdepends=( optdepends=(
r-bessel r-bessel
r-dfoptim r-dfoptim
r-dpq
r-mass r-mass
r-matrix
r-polynom r-polynom
r-pracma r-pracma
r-sfsmisc r-sfsmisc

3
BioArchLinux/r-screcover/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=scRecover
_pkgver=1.14.1 _pkgver=1.14.1
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.14.1 pkgver=1.14.1
pkgrel=1 pkgrel=2
pkgdesc='scRecover for imputation of single-cell RNA-seq data' pkgdesc='scRecover for imputation of single-cell RNA-seq data'
arch=('any') arch=('any')
url="https://bioconductor.org/packages/${_pkgname}" url="https://bioconductor.org/packages/${_pkgname}"
@ -20,7 +20,6 @@ depends=(
r-penalized r-penalized
r-preseqr r-preseqr
r-pscl r-pscl
r-rmagic
r-rsvd r-rsvd
r-saver r-saver
) )

1
BioArchLinux/r-screcover/lilac.yaml
View file

@ -12,7 +12,6 @@ repo_depends:
- r-penalized - r-penalized
- r-preseqr - r-preseqr
- r-pscl - r-pscl
- r-rmagic
- r-rsvd - r-rsvd
- r-saver - r-saver
update_on: update_on:

8
BioArchLinux/r-sendmailr/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=sendmailR
_pkgver=1.4-0 _pkgver=1.4-0
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.4.0 pkgver=1.4.0
pkgrel=1 pkgrel=2
pkgdesc='send email using R' pkgdesc='send email using R'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -13,6 +13,12 @@ depends=(
r r
r-base64enc r-base64enc
) )
optdepends=(
r-curl
r-htmltools
r-knitr
r-rmarkdown
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('5b8b91fc13f6b07b9fc5a2cf7591cf760fad47c5ea17d87a2891898c506454ad') sha256sums=('5b8b91fc13f6b07b9fc5a2cf7591cf760fad47c5ea17d87a2891898c506454ad')

3
BioArchLinux/r-statnet.common/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=statnet.common
_pkgver=4.8.0 _pkgver=4.8.0
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=4.8.0 pkgver=4.8.0
pkgrel=1 pkgrel=2
pkgdesc='Common R Scripts and Utilities Used by the Statnet Project Software' pkgdesc='Common R Scripts and Utilities Used by the Statnet Project Software'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -15,6 +15,7 @@ depends=(
) )
optdepends=( optdepends=(
r-covr r-covr
r-rlang
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('def999130673fbcb315fecf3620a2559864f51961a828625aa5cd5fded7946f0') sha256sums=('def999130673fbcb315fecf3620a2559864f51961a828625aa5cd5fded7946f0')

4
BioArchLinux/r-texreg/PKGBUILD
View file

@ -5,7 +5,7 @@ _pkgname=texreg
_pkgver=1.38.6 _pkgver=1.38.6
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.38.6 pkgver=1.38.6
pkgrel=1 pkgrel=2
pkgdesc='Conversion of R Regression Output to LaTeX or HTML Tables' pkgdesc='Conversion of R Regression Output to LaTeX or HTML Tables'
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -15,7 +15,7 @@ depends=(
r-httr r-httr
) )
optdepends=( optdepends=(
'pandoc: suggested for using wordregfunction' pandoc: suggested for using wordregfunction
r-aer r-aer
r-alpaca r-alpaca
r-bergm r-bergm

18
BioArchLinux/r-texreg/lilac.yaml
View file

@ -1,13 +1,15 @@
build_prefix: extra-x86_64 build_prefix: extra-x86_64
maintainers: maintainers:
- github: sukanka - github: sukanka
post_build_script: | post_build_script: 'git_pkgbuild_commit()
git_pkgbuild_commit()
update_aur_repo() update_aur_repo()
'
repo_depends: repo_depends:
- r-httr - r-httr
update_on: update_on:
- regex: texreg_([\d._-]+).tar.gz - regex: texreg_([\d._-]+).tar.gz
source: regex source: regex
url: https://cran.r-project.org/package=texreg url: https://cran.r-project.org/package=texreg
- alias: r - alias: r

3
BioArchLinux/r-tidybayes/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=tidybayes
_pkgver=3.0.3 _pkgver=3.0.3
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=3.0.3 pkgver=3.0.3
pkgrel=1 pkgrel=2
pkgdesc="Tidy Data and 'Geoms' for Bayesian Models" pkgdesc="Tidy Data and 'Geoms' for Bayesian Models"
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -36,7 +36,6 @@ optdepends=(
r-dotwhisker r-dotwhisker
r-emmeans r-emmeans
r-forcats r-forcats
r-gdtools
r-gganimate r-gganimate
r-ggrepel r-ggrepel
r-gifski r-gifski

3
BioArchLinux/r-tiledb/PKGBUILD
View file

@ -5,7 +5,7 @@ _pkgname=tiledb
_pkgver=0.18.0 _pkgver=0.18.0
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.18.0 pkgver=0.18.0
pkgrel=1 pkgrel=2
pkgdesc='Universal Storage Engine for Sparse and Dense Multidimensional Arrays' pkgdesc='Universal Storage Engine for Sparse and Dense Multidimensional Arrays'
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -14,7 +14,6 @@ depends=(
r r
r-nanotime r-nanotime
r-rcpp r-rcpp
r-rcppspdlog
r-spdl r-spdl
) )
optdepends=( optdepends=(

1
BioArchLinux/r-tiledb/lilac.yaml
View file

@ -5,7 +5,6 @@ maintainers:
repo_depends: repo_depends:
- r-nanotime - r-nanotime
- r-rcpp - r-rcpp
- r-rcppspdlog
- r-spdl - r-spdl
update_on: update_on:
- regex: tiledb_([\d._-]+).tar.gz - regex: tiledb_([\d._-]+).tar.gz

4
BioArchLinux/r-torch/PKGBUILD
View file

@ -5,7 +5,7 @@ _pkgname=torch
_pkgver=0.9.1 _pkgver=0.9.1
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.9.1 pkgver=0.9.1
pkgrel=1 pkgrel=2
pkgdesc="Tensors and Neural Networks with 'GPU' Acceleration" pkgdesc="Tensors and Neural Networks with 'GPU' Acceleration"
arch=('x86_64') arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -17,6 +17,7 @@ depends=(
r-cli r-cli
r-coro r-coro
r-ellipsis r-ellipsis
r-glue
r-magrittr r-magrittr
r-r6 r-r6
r-rcpp r-rcpp
@ -25,7 +26,6 @@ depends=(
) )
optdepends=( optdepends=(
r-covr r-covr
r-glue
r-katex r-katex
r-knitr r-knitr
r-mvtnorm r-mvtnorm

35
BioArchLinux/r-torch/lilac.yaml
View file

@ -1,21 +1,24 @@
build_prefix: extra-x86_64 build_prefix: extra-x86_64
maintainers: maintainers:
- github: sukanka - github: sukanka
post_build_script: | post_build_script: 'git_pkgbuild_commit()
git_pkgbuild_commit()
update_aur_repo() update_aur_repo()
'
repo_depends: repo_depends:
- r-bit64 - r-bit64
- r-callr - r-callr
- r-cli - r-cli
- r-coro - r-coro
- r-ellipsis - r-ellipsis
- r-magrittr - r-glue
- r-r6 - r-magrittr
- r-rcpp - r-r6
- r-rlang - r-rcpp
- r-withr - r-rlang
- r-withr
update_on: update_on:
- regex: torch_([\d._-]+).tar.gz - regex: torch_([\d._-]+).tar.gz
source: regex source: regex
url: https://cran.r-project.org/package=torch url: https://cran.r-project.org/package=torch

3
BioArchLinux/r-vcdextra/PKGBUILD
View file

@ -4,7 +4,7 @@ _pkgname=vcdExtra
_pkgver=0.8-2 _pkgver=0.8-2
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.8.2 pkgver=0.8.2
pkgrel=1 pkgrel=2
pkgdesc="'vcd' Extensions and Additions" pkgdesc="'vcd' Extensions and Additions"
arch=('any') arch=('any')
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=${_pkgname}"
@ -31,6 +31,7 @@ optdepends=(
r-plyr r-plyr
r-rgl r-rgl
r-rmarkdown r-rmarkdown
r-seriation
r-sleuth2 r-sleuth2
r-stats4 r-stats4
r-vgam r-vgam

16
BioArchLinux/r-vcdextra/lilac.yaml
View file

@ -1,12 +1,12 @@
build_prefix: extra-x86_64 build_prefix: extra-x86_64
maintainers: maintainers:
- github: sukanka - github: sukanka
repo_depends: repo_depends:
- r-ca - r-ca
- r-gnm - r-gnm
- r-vcd - r-vcd
update_on: update_on:
- regex: vcdExtra_([\d._-]+).tar.gz - regex: vcdExtra_([\d._-]+).tar.gz
source: regex source: regex
url: https://cran.r-project.org/package=vcdExtra url: https://cran.r-project.org/package=vcdExtra
- alias: r - alias: r