diff --git a/BioArchLinux/r-metabma/PKGBUILD b/BioArchLinux/r-metabma/PKGBUILD new file mode 100644 index 0000000000..8c6f30b90a --- /dev/null +++ b/BioArchLinux/r-metabma/PKGBUILD @@ -0,0 +1,48 @@ +# system requirements: GNU make +# Maintainer: sukanka + +_pkgname=metaBMA +_pkgver=0.6.7 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//[:-]/.} +pkgrel=1 +pkgdesc='Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis' +arch=('x86_64') +url="https://cran.r-project.org/package=${_pkgname}" +license=('GPL') +depends=( + r + r-bh + r-bridgesampling + r-coda + r-laplacesdemon + r-logspline + r-mvtnorm + r-rcpp + r-rcppeigen + r-rcppparallel + r-rstan + r-rstantools + r-stanheaders +) +optdepends=( + r-knitr + r-rmarkdown + r-spelling + r-testthat +) +makedepends=('make') +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('330bccb4b2297bc3a8b7291197c5e978b90b002907f762ede40f2d3e383367da') + +build() { + # restrict the usage of memory and cpu, 1 threads usually consumes 2 GiB memory. + export MAKE="make -j5" + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: diff --git a/BioArchLinux/r-metabma/lilac.py b/BioArchLinux/r-metabma/lilac.py new file mode 100644 index 0000000000..620556bc87 --- /dev/null +++ b/BioArchLinux/r-metabma/lilac.py @@ -0,0 +1,12 @@ +#!/usr/bin/env python3 +from lilaclib import * + +def pre_build(): + for line in edit_file('PKGBUILD'): + if line.startswith('_pkgver='): + line = f'_pkgver={_G.newver}' + print(line) + update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.')) + +def post_build(): + git_pkgbuild_commit() diff --git a/BioArchLinux/r-metabma/lilac.yaml b/BioArchLinux/r-metabma/lilac.yaml new file mode 100644 index 0000000000..5fdea5e191 --- /dev/null +++ b/BioArchLinux/r-metabma/lilac.yaml @@ -0,0 +1,20 @@ +build_prefix: extra-x86_64 +maintainers: + - github: sukanka +repo_depends: + - r-bh + - r-bridgesampling + - r-coda + - r-laplacesdemon + - r-logspline + - r-mvtnorm + - r-rcpp + - r-rcppeigen + - r-rcppparallel + - r-rstan + - r-rstantools + - r-stanheaders +update_on: + - regex: metaBMA_([\d._-]+).tar.gz + source: regex + url: https://cran.r-project.org/package=metaBMA diff --git a/BioArchLinux/r-rstanarm/PKGBUILD b/BioArchLinux/r-rstanarm/PKGBUILD index 9861ce33a2..46fe828f1e 100644 --- a/BioArchLinux/r-rstanarm/PKGBUILD +++ b/BioArchLinux/r-rstanarm/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=rstanarm _pkgver=2.21.3 pkgname=r-${_pkgname,,} -pkgver=2.21.3 +pkgver=${_pkgver//[:-]/.} pkgrel=1 pkgdesc='Bayesian Applied Regression Modeling via Stan' arch=('x86_64') @@ -46,6 +46,8 @@ source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") sha256sums=('e9f2d3761b8e4f14a6690beb633b08633cba7269ac8b969aedaa12844d1a32a7') build() { + # restrict the usage of memory and cpu, 1 threads usually consumes 2 GiB memory. + export MAKE="make -j5" R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" }