From 436f263f484dab0a6b8ee31ee31bd71061069e03 Mon Sep 17 00:00:00 2001
From: sukanka <su975853527@gmail.com>
Date: Wed, 23 Nov 2022 21:23:46 +0800
Subject: [PATCH] prepare prothint

---
 prepare/prothint/PKGBUILD   | 23 +++++++++++++++++++++++
 prepare/prothint/lilac.py   | 10 ++++++++++
 prepare/prothint/lilac.yaml | 14 ++++++++++++++
 3 files changed, 47 insertions(+)
 create mode 100644 prepare/prothint/PKGBUILD
 create mode 100644 prepare/prothint/lilac.py
 create mode 100644 prepare/prothint/lilac.yaml

diff --git a/prepare/prothint/PKGBUILD b/prepare/prothint/PKGBUILD
new file mode 100644
index 0000000000..da945b8e33
--- /dev/null
+++ b/prepare/prothint/PKGBUILD
@@ -0,0 +1,23 @@
+# Contributor: sukanka <su975853527 at gmail.com>
+_pkgname=ProtHint
+pkgname=${_pkgname,,}
+pkgver=2.6.0
+pkgrel=0
+pkgdesc="Protein hint generation pipeline for gene finding in eukaryotic genomes."
+arch=('x86_64')
+license=('custom')
+depends=('python' 'perl' 'diamond' 'perl-mce' 'perl-yaml' 'perl-math-utils' 'perl-threads')
+url="https://github.com/gatech-genemark/ProtHint"
+source=("$pkgname-$pkgver.tar.gz::${url}/releases/download/v${pkgver}/${_pkgname}-${pkgver}.tar.gz")
+sha256sums=('f6a8ef366d924508c953a4cedc660442694dfa41ec2180da32799be5094fe51f')
+
+package() {
+  install -d "$pkgdir"/usr/lib/$_pkgname
+  cp -rf "$srcdir"/$_pkgname-$pkgver/* "$pkgdir"/usr/lib/$_pkgname
+  cd "$pkgdir"/usr/lib/$_pkgname
+  install -Dm644 LICENSE "$pkgdir"/usr/share/licenses/$_pkgname/LICENSE
+
+  rm -rf docs .gitignore CHANGELOG README.md LICENSE
+  ln -sf /usr/bin/diamond "$pkgdir"/usr/lib/$_pkgname/dependencies/diamond
+
+}
diff --git a/prepare/prothint/lilac.py b/prepare/prothint/lilac.py
new file mode 100644
index 0000000000..8c66f58ed6
--- /dev/null
+++ b/prepare/prothint/lilac.py
@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()
diff --git a/prepare/prothint/lilac.yaml b/prepare/prothint/lilac.yaml
new file mode 100644
index 0000000000..b046c3e07c
--- /dev/null
+++ b/prepare/prothint/lilac.yaml
@@ -0,0 +1,14 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: kuoi@bioarchlinux.org
+repo_depends:
+  - diamond
+  - perl-mce
+  - perl-math-utils
+  - perl-threads
+update_on:
+  - source: github
+    github: gatech-genemark/ProtHint
+    use_latest_release: true
+    prefix: "v"