From 4465ccd8732b22823bae2833108a7434ad4cf5aa Mon Sep 17 00:00:00 2001
From: Pekka Ristola <pekkarr@protonmail.com>
Date: Sun, 22 Oct 2023 16:28:53 +0300
Subject: [PATCH] r-hdci: init, dependency of r-ifaa

---
 BioArchLinux/r-hdci/PKGBUILD   | 32 ++++++++++++++++++++++++++++++++
 BioArchLinux/r-hdci/lilac.py   | 17 +++++++++++++++++
 BioArchLinux/r-hdci/lilac.yaml | 17 +++++++++++++++++
 3 files changed, 66 insertions(+)
 create mode 100644 BioArchLinux/r-hdci/PKGBUILD
 create mode 100644 BioArchLinux/r-hdci/lilac.py
 create mode 100644 BioArchLinux/r-hdci/lilac.yaml

diff --git a/BioArchLinux/r-hdci/PKGBUILD b/BioArchLinux/r-hdci/PKGBUILD
new file mode 100644
index 0000000000..98096a6b21
--- /dev/null
+++ b/BioArchLinux/r-hdci/PKGBUILD
@@ -0,0 +1,32 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=HDCI
+_pkgver=1.0-2
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="High Dimensional Confidence Interval Based on Lasso and Bootstrap"
+arch=(any)
+url="https://cran.r-project.org/package=${_pkgname}"
+license=(GPL2)
+depends=(
+  r-doparallel
+  r-foreach
+  r-glmnet
+  r-iterators
+  r-mvtnorm
+  r-slam
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('806dea67dc386f8782b82ad5172fb234')
+sha256sums=('7fb6f89df772fe8feb9e3e00e567600318b9ec16059c4c20acfef93549d9ab73')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}
diff --git a/BioArchLinux/r-hdci/lilac.py b/BioArchLinux/r-hdci/lilac.py
new file mode 100644
index 0000000000..28898ccd1b
--- /dev/null
+++ b/BioArchLinux/r-hdci/lilac.py
@@ -0,0 +1,17 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(
+        _G,
+        expect_license = "GNU General Public License version 2",
+    )
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()
diff --git a/BioArchLinux/r-hdci/lilac.yaml b/BioArchLinux/r-hdci/lilac.yaml
new file mode 100644
index 0000000000..0618e98284
--- /dev/null
+++ b/BioArchLinux/r-hdci/lilac.yaml
@@ -0,0 +1,17 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-doparallel
+- r-foreach
+- r-glmnet
+- r-iterators
+- r-mvtnorm
+- r-slam
+update_on:
+- source: rpkgs
+  pkgname: HDCI
+  repo: cran
+  md5: true
+- alias: r