r-mpo.db: use metadata checks

BioArchLinux/r-mpo.db/PKGBUILD

@@ -1,35 +1,44 @@
-# Maintainer: sukanka <su975853527@gmail.com>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: sukanka <su975853527@gmail.com>
 
 _pkgname=MPO.db
 _pkgver=0.99.7
 pkgname=r-${_pkgname,,}
-pkgver=${_pkgver//[:-]/.}
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='A set of annotation maps describing the Mouse Phenotype Ontology'
-arch=('any')
+pkgdesc="A set of annotation maps describing the Mouse Phenotype Ontology"
+arch=(any)
 url="https://bioconductor.org/packages/${_pkgname}"
-license=('Artistic2.0')
+license=(Artistic2.0)
 depends=(
-  r
   r-annotationdbi
   r-annotationhub
   r-biocfilecache
   r-dbi
 )
+checkdepends=(
+  r-testthat
+)
 optdepends=(
   r-knitr
   r-rmarkdown
   r-testthat
 )
 source=("https://bioconductor.org/packages/release/data/annotation/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('1f1b83d5d03d69a82ca2b9e7179b537f')
 sha256sums=('74b3e8f0a3b5b896b5d0c944e3334c750a4404b800fa70da9a2aa1f066643974')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-mpo.db/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-mpo.db/lilac.yaml

@@ -1,23 +1,17 @@
 build_prefix: extra-x86_64
 maintainers:
-  - github: sukanka
-    email: su975853527@gmail.com
-post_build_script: |
-  git_pkgbuild_commit()
-  update_aur_repo()
-pre_build_script: |
-  for line in edit_file('PKGBUILD'):
-    if line.startswith('_pkgver='):
-      line = f'_pkgver={_G.newver}'
-    print(line)
-  update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+- github: pekkarr
+  email: pekkarr@protonmail.com
 repo_depends:
 - r-annotationdbi
 - r-annotationhub
 - r-biocfilecache
 - r-dbi
+repo_makedepends:
+- r-testthat
 update_on:
-  - regex: MPO.db_([\d._-]+).tar.gz
-    source: regex
-    url: https://bioconductor.org/packages/MPO.db
+- source: rpkgs
+  pkgname: MPO.db
+  repo: bioc-data-annotation
+  md5: true
 - alias: r