add arb-bio: build fail

This commit is contained in:
sukanka 2022-07-12 23:32:45 +08:00
parent ee1a45c318
commit 490518c78a

44
prepare/arb-bio/PKGBUILD Normal file
View file

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# Maintainer: Guoyi
pkgname=arb-bio
pkgver=7.0
pkgrel=1
pkgdesc="C++ library and cmdline tools for parsing and manipulating VCF files doi: 10.1101/2021.05.21.445151"
arch=('x86_64')
url="http://www.arb-home.de/"
license=('UNKNOWN')
depends=('lynx' 'imake' 'time' 'libxslt'
)
makedepends=('xerces-c' 'clang' 'libtirpc' 'boost')
source=("${pkgname}-${pkgver}.tgz::http://download.arb-home.de/production/2021_09_16/arb-r18733-source.tgz"
)
md5sums=('a491b52f74fc4ddbd0ec373311ece8a0')
prepare(){
mv arbsrc_* ${pkgname}-${pkgver}
cd ${srcdir}/${pkgname}-${pkgver}
cp config.makefile.template config.makefile
sed -i 's|-lCORE|-lCORE -ltirpc|g' Makefile
# If use gcc, also fail.
# gccver=$(gcc --version | grep ^gcc | sed 's/^.* //g')
# sed "s|9.3.0|9.3.0 ${gccver}|g" -i Makefile
# sed -i 's/LOOP_VECTORIZED//g' CORE/arb_strarray.cxx
# sed -i 's|LOOP_VECTORIZED=2\[||g' MULTI_PROBE/MP_sonde.cxx
}
build() {
cd $srcdir/${pkgname}-${pkgver}
export ARBHOME=${srcdir}/${pkgname}-${pkgver}
export PATH=$ARBHOME/bin:$PATH
export XINCLUDES="-I/usr/include -I/usr/include/tirpc"
export CC=clang
export CXX=clang++
make
make all
}
package() {
cd $srcdir/arbsrc_*
make install DESTDIR="$pkgdir"
}