From 4e473afb809f3f6fdcde44446a9e27e8b75504ec Mon Sep 17 00:00:00 2001
From: starsareintherose <starsareintherose@outlook.com>
Date: Tue, 2 Nov 2021 21:48:27 +0000
Subject: [PATCH] add tempest

---
 tempest/PKGBUILD        | 25 +++++++++++++++++++++++++
 tempest/lilac.py        | 10 ++++++++++
 tempest/lilac.yaml      |  8 ++++++++
 tempest/tempest.desktop | 18 ++++++++++++++++++
 4 files changed, 61 insertions(+)
 create mode 100644 tempest/PKGBUILD
 create mode 100755 tempest/lilac.py
 create mode 100644 tempest/lilac.yaml
 create mode 100644 tempest/tempest.desktop

diff --git a/tempest/PKGBUILD b/tempest/PKGBUILD
new file mode 100644
index 0000000000..ba0704e81f
--- /dev/null
+++ b/tempest/PKGBUILD
@@ -0,0 +1,25 @@
+# Maintainer: Malacology <guoyizhang at malacology dot com>
+# Contributor: Malacology <guoyizhang at malacology dot com>
+
+pkgname=tempest
+pkgver=1.5.3
+pkgrel=1
+depends=(
+	'java-runtime'
+)
+pkgdesc="a tool for investigating the temporal signal and 'clocklikeness' of molecular phylogenies"
+arch=('x86_64')
+url="http://tree.bio.ed.ac.uk/software/tempest/"
+license=('GPL2')
+source=("http://tree.bio.ed.ac.uk/download.php?id=102&num=3" "tempest.desktop")
+sha256sums=('83e482a7ba946e38606cc3331765db45b4331337d92d030ebeb537e3e16fa44e'
+            '2af28c04f9d96f046947efeab28c27552be88ac56af0d8f1a0db2e439a228c45')
+
+package() {
+    install -dm755 "$pkgdir"/usr/{bin,share/{applications,tempest}}
+    install -m 755 ${srcdir}/*.desktop ${pkgdir}/usr/share/applications
+    mv ${srcdir}/TempEst_v${pkgver}/* ${pkgdir}/usr/share/tempest
+    chmod +x  ${pkgdir}/usr/share/tempest/bin/tempest
+    ln -s /usr/share/tempest/bin/tempest ${pkgdir}/usr/bin/tempest
+}
+
diff --git a/tempest/lilac.py b/tempest/lilac.py
new file mode 100755
index 0000000000..fcbff72939
--- /dev/null
+++ b/tempest/lilac.py
@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+    run_cmd(['updpkgsums'])
+
+def post_build():
+    git_add_files('PKGBUILD')
+    git_commit()
diff --git a/tempest/lilac.yaml b/tempest/lilac.yaml
new file mode 100644
index 0000000000..5d9ac143ba
--- /dev/null
+++ b/tempest/lilac.yaml
@@ -0,0 +1,8 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: regex
+    url: http://tree.bio.ed.ac.uk/software/tempest/
+    regex: TempEst_v(\d+.\d+.\d).tgz
diff --git a/tempest/tempest.desktop b/tempest/tempest.desktop
new file mode 100644
index 0000000000..825fb37822
--- /dev/null
+++ b/tempest/tempest.desktop
@@ -0,0 +1,18 @@
+[Desktop Entry]
+Categories=
+Encoding=UTF-8
+Exec=java -jar /usr/share/tempest/lib/tempest.jar
+GenericName=
+GenericName[zh]=
+Icon=/usr/share/tempest/images/tempest.png
+MimeType=
+Name=TempEst
+ServiceTypes=
+SwallowExec=
+SwallowTitle=
+Terminal=false
+TerminalOptions=
+Type=Application
+X-KDE-SubstituteUID=false
+X-KDE-Username=root
+