From 54808a7cceded5556f30ddb24f87fae220188a08 Mon Sep 17 00:00:00 2001
From: Shun Wang <shuonwang@gmail.com>
Date: Fri, 5 Jan 2024 20:45:37 +0800
Subject: [PATCH] Update jasp analysis modules pkgs (#195)

* Add jaspSurvival pkg for JASP

* Add jaspProcess pkg for JASP

* Add pkgs to jaspDesktop dependencies
---
 BioArchLinux/jasp-desktop/PKGBUILD     |  2 ++
 BioArchLinux/jasp-desktop/lilac.yaml   |  2 ++
 BioArchLinux/r-jaspprocess/PKGBUILD    | 34 ++++++++++++++++++++++++++
 BioArchLinux/r-jaspprocess/lilac.yaml  | 26 ++++++++++++++++++++
 BioArchLinux/r-jaspsurvival/PKGBUILD   | 32 ++++++++++++++++++++++++
 BioArchLinux/r-jaspsurvival/lilac.yaml | 24 ++++++++++++++++++
 6 files changed, 120 insertions(+)
 create mode 100644 BioArchLinux/r-jaspprocess/PKGBUILD
 create mode 100644 BioArchLinux/r-jaspprocess/lilac.yaml
 create mode 100644 BioArchLinux/r-jaspsurvival/PKGBUILD
 create mode 100644 BioArchLinux/r-jaspsurvival/lilac.yaml

diff --git a/BioArchLinux/jasp-desktop/PKGBUILD b/BioArchLinux/jasp-desktop/PKGBUILD
index a152ced67b..3c17ee37e5 100644
--- a/BioArchLinux/jasp-desktop/PKGBUILD
+++ b/BioArchLinux/jasp-desktop/PKGBUILD
@@ -59,11 +59,13 @@ depends=('r'
 "r-jaspmetaanalysis"
 "r-jaspnetwork"
 "r-jasppower"
+"r-jaspprocess"
 "r-jaspprophet"
 "r-jaspreliability"
 "r-jasprobustttests"
 "r-jaspsem"
 "r-jaspsummarystatistics"
+"r-jaspsurvival"
 "r-jasptimeseries"
 "r-jaspvisualmodeling"
 "r-jaspacceptancesampling"
diff --git a/BioArchLinux/jasp-desktop/lilac.yaml b/BioArchLinux/jasp-desktop/lilac.yaml
index 8b97ab9f4a..6d630fa4cc 100644
--- a/BioArchLinux/jasp-desktop/lilac.yaml
+++ b/BioArchLinux/jasp-desktop/lilac.yaml
@@ -30,10 +30,12 @@ repo_depends:
   - "r-jaspmetaanalysis"
   - "r-jaspnetwork"
   - "r-jasppower"
+  - "r-jaspprocess"
   - "r-jaspprophet"
   - "r-jaspreliability"
   - "r-jaspsem"
   - "r-jaspsummarystatistics"
+  - "r-jaspsurvival"
   - "r-jasptimeseries"
   - "r-jaspvisualmodeling"
   - "r-jaspacceptancesampling"
diff --git a/BioArchLinux/r-jaspprocess/PKGBUILD b/BioArchLinux/r-jaspprocess/PKGBUILD
new file mode 100644
index 0000000000..54a35c29b6
--- /dev/null
+++ b/BioArchLinux/r-jaspprocess/PKGBUILD
@@ -0,0 +1,34 @@
+#Maintainer: sukanka <su975853527 AT gmail.com>
+_pkgname=jaspProcess
+_pkgver=0.18.2
+pkgname=r-${_pkgname,,}
+pkgver=0.18.2
+pkgrel=1
+pkgdesc="Process Module required by JASP"
+arch=('any')
+url="https://github.com/jasp-stats/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-dagitty
+  r-ggplot2
+  r-ggraph
+  r-grid
+  r-jaspbase
+  r-jaspgraphs
+)
+groups=(r-jasp r-jaspextra)
+source=("${_pkgname}_${_pkgver}.tar.gz::${url}/archive/refs/tags/v${_pkgver}.tar.gz")
+sha256sums=('2f95029ba480efa86aa97cbac941c5c98b54ce3baad782b87dbe3a89e9b9fa37')
+
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  mkdir -p  ${pkgdir}/usr/lib/jasp-desktop/Modules
+  ln -s /usr/lib/R/library ${pkgdir}/usr/lib/jasp-desktop/Modules/${_pkgname}
+}
diff --git a/BioArchLinux/r-jaspprocess/lilac.yaml b/BioArchLinux/r-jaspprocess/lilac.yaml
new file mode 100644
index 0000000000..28f95b6c38
--- /dev/null
+++ b/BioArchLinux/r-jaspprocess/lilac.yaml
@@ -0,0 +1,26 @@
+maintainers:
+  - github: sukanka
+    email: su975853527@gmail.com
+build_prefix: extra-x86_64
+post_build_script: |
+  git_pkgbuild_commit()
+  update_aur_repo()
+pre_build_script: |
+  for line in edit_file('PKGBUILD'):
+    if line.startswith('_pkgver='):
+      line = f'_pkgver={_G.newver}'
+    print(line)
+  update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+repo_depends:
+  - r-dagitty
+  - r-ggplot2
+  - r-ggraph
+  - r-grid
+  - r-jaspbase
+  - r-jaspgraphs
+update_on:
+  - source: github
+    github: jasp-stats/jaspProcess
+    use_max_tag: true
+    prefix: v
+  - alias: r
diff --git a/BioArchLinux/r-jaspsurvival/PKGBUILD b/BioArchLinux/r-jaspsurvival/PKGBUILD
new file mode 100644
index 0000000000..fe9e7c30dd
--- /dev/null
+++ b/BioArchLinux/r-jaspsurvival/PKGBUILD
@@ -0,0 +1,32 @@
+#Maintainer: sukanka <su975853527 AT gmail.com>
+_pkgname=jaspSurvival
+_pkgver=0.18.2
+pkgname=r-${_pkgname,,}
+pkgver=0.18.2
+pkgrel=1
+pkgdesc="A Survival analysis module required by JASP"
+arch=('any')
+url="https://github.com/jasp-stats/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-survival
+  r-survminer
+  r-jaspbase
+  r-jaspgraphs
+)
+groups=(r-jasp r-jaspextra)
+source=("${_pkgname}_${_pkgver}.tar.gz::${url}/archive/refs/tags/v${_pkgver}.tar.gz")
+sha256sums=('51ec2855648cf26f627638dc524262043c7efe0913e37733592971b935443a9f')
+
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  mkdir -p  ${pkgdir}/usr/lib/jasp-desktop/Modules
+  ln -s /usr/lib/R/library ${pkgdir}/usr/lib/jasp-desktop/Modules/${_pkgname}
+}
diff --git a/BioArchLinux/r-jaspsurvival/lilac.yaml b/BioArchLinux/r-jaspsurvival/lilac.yaml
new file mode 100644
index 0000000000..5678a7b13b
--- /dev/null
+++ b/BioArchLinux/r-jaspsurvival/lilac.yaml
@@ -0,0 +1,24 @@
+maintainers:
+  - github: sukanka
+    email: su975853527@gmail.com
+build_prefix: extra-x86_64
+post_build_script: |
+  git_pkgbuild_commit()
+  update_aur_repo()
+pre_build_script: |
+  for line in edit_file('PKGBUILD'):
+    if line.startswith('_pkgver='):
+      line = f'_pkgver={_G.newver}'
+    print(line)
+  update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+repo_depends:
+  - r-survival
+  - r-survminer
+  - r-jaspBase
+  - r-jaspGraphs
+update_on:
+  - source: github
+    github: jasp-stats/jaspSurvival
+    use_max_tag: true
+    prefix: v
+  - alias: r