From 5742e6388504be5de3a05314ade1ed240e6f9089 Mon Sep 17 00:00:00 2001
From: Guoyi Zhang <kuoi@bioarchlinux.org>
Date: Mon, 28 Oct 2024 13:01:19 +1100
Subject: [PATCH] tnt*: fix the mpich missing

---
 BioArchLinux/mpich/PKGBUILD      | 2 ++
 BioArchLinux/oblong/lilac.yaml   | 2 +-
 BioArchLinux/tnt/PKGBUILD        | 2 +-
 BioArchLinux/tnt/lilac.yaml      | 3 ++-
 BioArchLinux/winclada/lilac.yaml | 2 +-
 5 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/BioArchLinux/mpich/PKGBUILD b/BioArchLinux/mpich/PKGBUILD
index ccafb25978..b2f0fe0e94 100644
--- a/BioArchLinux/mpich/PKGBUILD
+++ b/BioArchLinux/mpich/PKGBUILD
@@ -61,6 +61,8 @@ package() {
   make DESTDIR="${pkgdir}" install
 
   ln -sf mpiexec.hydra "${pkgdir}/opt/mpich/bin/mpirun.hydra"
+  # for mpitnt
+  ln -s  /opt/mpich/lib/libmpich.so "$pkgdir"/usr/lib/libmpich.so.0
 
   install -D -m644 "${srcdir}/${pkgname}-${pkgver}/COPYRIGHT" "${pkgdir}/usr/share/licenses/mpich/license.txt"
   install -D -m755 "${srcdir}/${pkgname}.profile" "${pkgdir}/etc/profile.d/mpich.sh"
diff --git a/BioArchLinux/oblong/lilac.yaml b/BioArchLinux/oblong/lilac.yaml
index 755f04e64c..279133badf 100644
--- a/BioArchLinux/oblong/lilac.yaml
+++ b/BioArchLinux/oblong/lilac.yaml
@@ -4,4 +4,4 @@ maintainers:
     email: kuoi@bioarchlinux.org
 update_on:
   - source: cmd
-    cmd: curl -sS https://www.lillo.org.ar/phylogeny/oblong/ | grep 'oblong.zip' | awk '{print $7}' | sed 's/-/./g'
+    cmd: curl -sS -k https://www.lillo.org.ar/phylogeny/oblong/ | grep 'oblong.zip' | awk '{print $7}' | sed 's/-/./g'
diff --git a/BioArchLinux/tnt/PKGBUILD b/BioArchLinux/tnt/PKGBUILD
index 15496df6b9..f47e6e603d 100644
--- a/BioArchLinux/tnt/PKGBUILD
+++ b/BioArchLinux/tnt/PKGBUILD
@@ -36,7 +36,7 @@ package_tnt-mpi () {
 	install -Dm 755 mpitnt ${pkgdir}/usr/bin/mpitnt
 }
 package_tnt-gui () {
-  depends=('ncurses5-compat-libs' 'gtk3' 'glibc')
+  depends=('ncurses5-compat-libs' 'gtk3' 'glibc' 'mpich')
   optdepends=('pvm')
 	cd ${srcdir}/TNT-bin
 	chmod +x gTNT
diff --git a/BioArchLinux/tnt/lilac.yaml b/BioArchLinux/tnt/lilac.yaml
index 4509f8bb5e..a90cc72032 100644
--- a/BioArchLinux/tnt/lilac.yaml
+++ b/BioArchLinux/tnt/lilac.yaml
@@ -8,7 +8,8 @@ post_build_script: |
   git_pkgbuild_commit()
 update_on:
   - source: cmd
-    cmd: curl -sS https://www.lillo.org.ar/phylogeny/ | grep 'tnt' | sed 's@-@.@g' | awk '{print $6}'
+    cmd: curl -sS -k https://www.lillo.org.ar/phylogeny/ | grep 'tnt' | sed 's@-@.@g' | awk '{print $6}'
 repo_depends:
   - ncurses5-compat-libs
   - pvm
+  - mpich
diff --git a/BioArchLinux/winclada/lilac.yaml b/BioArchLinux/winclada/lilac.yaml
index 9492140adf..2d9f33cb02 100644
--- a/BioArchLinux/winclada/lilac.yaml
+++ b/BioArchLinux/winclada/lilac.yaml
@@ -9,7 +9,7 @@ post_build_script: |
   update_aur_repo()
 update_on:
   - source: cmd
-    cmd: curl -sS https://www.lillo.org.ar/phylogeny/winclada/ | grep 'winclad' | sed 's@-@.@g' | awk '{print $7}'
+    cmd: curl -sS -k https://www.lillo.org.ar/phylogeny/winclada/ | grep 'winclad' | sed 's@-@.@g' | awk '{print $7}'
 #update_on:
 #  - regex: (\d+-\d+-\d+) \d+:\d+    -
 #    source: regex