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trinityrnaseq: fix java path

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Kuoi 2024-02-16 05:55:54 +08:00
parent f8fb59196d
commit 588c972ced
1 changed files with 3 additions and 3 deletions
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6
BioArchLinux/trinityrnaseq/PKGBUILD
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@ -33,12 +33,12 @@ package_trinityrnaseq() {
# 'xz' 'bzip2' 'curl' # 'xz' 'bzip2' 'curl'
cd $srcdir/$basename cd $srcdir/$basename
mkdir -p $pkgdir/usr/{share/{$pkgname,java},bin} mkdir -p $pkgdir/usr/{share/{$basename,java},bin}
# Dir # Dir
for dir in Analysis PerlLib PyLib for dir in Analysis PerlLib PyLib
do do
mkdir -p $pkgdir/usr/share/$dir mkdir -p $pkgdir/usr/share/$basename/$dir
find $dir -type f -exec install -D -m 755 {} $pkgdir/usr/share/$basename/$dir/ \; find $dir -type f -exec install -D -m 755 {} $pkgdir/usr/share/$basename/$dir/ \;
done done
@ -53,7 +53,7 @@ done
install -Dm755 trinity-plugins/BIN/seqtk-trinity $pkgdir/usr/bin/seqtk-trinity install -Dm755 trinity-plugins/BIN/seqtk-trinity $pkgdir/usr/bin/seqtk-trinity
# Java # Java
install -Dm755 Butterfly/Butterfly.jar $pkgdir/usr/share/Butterfly.jar install -Dm755 Butterfly/Butterfly.jar $pkgdir/usr/share/java/Butterfly.jar
# Plugin # Plugin
# Todo: check trinity-plugins/scaffold_iworm_contigs/scaffold_iworm_contigs # Todo: check trinity-plugins/scaffold_iworm_contigs/scaffold_iworm_contigs