diff --git a/BioArchLinux/r-alabaster.bumpy/PKGBUILD b/BioArchLinux/r-alabaster.bumpy/PKGBUILD new file mode 100644 index 0000000000..09181e9d1b --- /dev/null +++ b/BioArchLinux/r-alabaster.bumpy/PKGBUILD @@ -0,0 +1,49 @@ +# Maintainer: Pekka Ristola + +_pkgname=alabaster.bumpy +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Save and Load BumpyMatrices to/from file" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-alabaster.base + r-biocgenerics + r-bumpymatrix + r-iranges + r-s4vectors +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-jsonlite + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('7c4104e604cc3b9d6f7b3d8d9a81bfb1') +sha256sums=('355df5a045bbe3d246f12043ae1e03bd42ec933d319303c0ebabb26be16adfaf') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} diff --git a/BioArchLinux/r-alabaster.bumpy/lilac.py b/BioArchLinux/r-alabaster.bumpy/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-alabaster.bumpy/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-alabaster.bumpy/lilac.yaml b/BioArchLinux/r-alabaster.bumpy/lilac.yaml new file mode 100644 index 0000000000..24cde6bdf2 --- /dev/null +++ b/BioArchLinux/r-alabaster.bumpy/lilac.yaml @@ -0,0 +1,18 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-alabaster.base +- r-biocgenerics +- r-bumpymatrix +- r-iranges +- r-s4vectors +repo_makedepends: +- r-testthat +update_on: +- source: rpkgs + pkgname: alabaster.bumpy + repo: bioc + md5: true +- alias: r