From a24dac72c1c79e52985b3fc63cab2f44686a352c Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 22 Mar 2023 05:17:06 +0000 Subject: [PATCH 1/4] bioarchlinux-mirrorlist: auto updated to 2023.03.22-1 --- BioArchLinux/bioarchlinux-mirrorlist/PKGBUILD | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/BioArchLinux/bioarchlinux-mirrorlist/PKGBUILD b/BioArchLinux/bioarchlinux-mirrorlist/PKGBUILD index 0e05f94ff0..49763b5d14 100644 --- a/BioArchLinux/bioarchlinux-mirrorlist/PKGBUILD +++ b/BioArchLinux/bioarchlinux-mirrorlist/PKGBUILD @@ -1,7 +1,7 @@ # Maintainer: Guoyi pkgname=bioarchlinux-mirrorlist -pkgver=2023.02.09 +pkgver=2023.03.22 pkgrel=1 pkgdesc="BioArchLinux mirror list for use by pacman" arch=('any') @@ -9,7 +9,7 @@ url="https://github.com/BioArchLinux/mirror" license=('GPL') backup=(etc/pacman.d/mirrorlist.bio) source=(https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio) -sha256sums=('8a90984620549313c521f12b8b4dea49275af9056959d966973f97a97ce41c63') +sha256sums=('bf34baf5b9b662e63a714946c9de8548c85daab14e4f10ba570234bb8a723228') pkgver(){ curl -sSi https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio | grep 'date' | sed 's/Jan/01/g;s/Feb/02/g;s/Mar/03/g;s/Apr/04/g;s/May/05/g;s/Jun/06/g;s/Jul/07/g;s/Aug/08/g;s/Sep/09/g;s/Oct/10/g;s/Nov/11/g;s/Dec/12/g' | awk '{print $5,$4,$3}' | sed 's/ /./g' } From 088a147a1e533dbcaf882ef87fb0ee60b1972d32 Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 22 Mar 2023 05:24:58 +0000 Subject: [PATCH 2/4] bwa: auto updated to 0.7.17.r54.g139f68f-5 --- BioArchLinux/bwa/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/bwa/PKGBUILD b/BioArchLinux/bwa/PKGBUILD index 0dbe4c445d..b6c07b2dbf 100644 --- a/BioArchLinux/bwa/PKGBUILD +++ b/BioArchLinux/bwa/PKGBUILD @@ -2,7 +2,7 @@ pkgname=bwa pkgver=0.7.17.r54.g139f68f -pkgrel=4 +pkgrel=5 pkgdesc="Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome. https://doi.org/10.1093/bioinformatics/btp324" arch=('x86_64') url="http://bio-bwa.sourceforge.net/" From ba7eb2a070290e2eacc9913e810b8a7684230001 Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 22 Mar 2023 05:26:13 +0000 Subject: [PATCH 3/4] seqlib: auto updated to 1.2.0-9 --- BioArchLinux/seqlib/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/seqlib/PKGBUILD b/BioArchLinux/seqlib/PKGBUILD index ea0a85ab09..d03016bf9c 100644 --- a/BioArchLinux/seqlib/PKGBUILD +++ b/BioArchLinux/seqlib/PKGBUILD @@ -1,6 +1,6 @@ pkgname=seqlib pkgver=1.2.0 -pkgrel=8 +pkgrel=9 pkgdesc="C++ htslib/bwa-mem/fermi interface for interrogating sequence data" arch=('i686' 'x86_64') url="https://github.com/walaj/SeqLib" From 35198822b13edf7faa588d06953ac4489e0481a7 Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 22 Mar 2023 05:27:19 +0000 Subject: [PATCH 4/4] freebayes: auto updated to 1.3.7-1 --- BioArchLinux/freebayes/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/freebayes/PKGBUILD b/BioArchLinux/freebayes/PKGBUILD index 8c98b3d3e2..c61d9d077e 100644 --- a/BioArchLinux/freebayes/PKGBUILD +++ b/BioArchLinux/freebayes/PKGBUILD @@ -2,7 +2,7 @@ # Contributor: Clint Valentine pkgname=freebayes pkgver=1.3.7 -pkgrel=0 +pkgrel=1 pkgdesc="About Bayesian haplotype-based genetic polymorphism discovery and genotyping" arch=('x86_64') url="https://github.com/freebayes/freebayes"