From 6018d2b58d6956d8bc2714511c0da47afd40bedf Mon Sep 17 00:00:00 2001
From: starsareintherose <starsareintherose@outlook.com>
Date: Tue, 2 Nov 2021 21:22:01 +0000
Subject: [PATCH] add phylonet

---
 phylonet/PKGBUILD   | 22 ++++++++++++++++++++++
 phylonet/lilac.py   | 10 ++++++++++
 phylonet/lilac.yaml |  8 ++++++++
 3 files changed, 40 insertions(+)
 create mode 100644 phylonet/PKGBUILD
 create mode 100755 phylonet/lilac.py
 create mode 100644 phylonet/lilac.yaml

diff --git a/phylonet/PKGBUILD b/phylonet/PKGBUILD
new file mode 100644
index 0000000000..ec07368cab
--- /dev/null
+++ b/phylonet/PKGBUILD
@@ -0,0 +1,22 @@
+# Maintainer: Malacology <guoyizhang at malacology dot com>
+# Contributor: Malacology <guoyizhang at malacology dot com>
+
+pkgname=phylonet
+_installname=PhyloNet
+pkgver=3.8.3
+pkgrel=1
+depends=(
+	'java-runtime'
+)
+pkgdesc="TA suite of software tools for reconstructing/analyzing phylogenetic networks in the presence of reticulate evolutionary events"
+arch=('x86_64')
+url="https://bioinfocs.rice.edu/PhyloNet"
+license=('GPL2')
+source=(""https://github.com/NakhlehLab/PhyloNet/releases/download/${pkgver}/PhyloNet.jar)
+sha256sums=('a03a4be48f0bd40b8b98b8c99be09bf8a3d509995d4d36aa1e33ecdfeb14c4a6')
+
+package() {
+    install -dm755 "$pkgdir"/usr/share
+    install -Dm644 ${srcdir}/${_installname}.jar ${pkgdir}/usr/share/phylonet/${_installname}.jar
+}
+
diff --git a/phylonet/lilac.py b/phylonet/lilac.py
new file mode 100755
index 0000000000..fcbff72939
--- /dev/null
+++ b/phylonet/lilac.py
@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+    run_cmd(['updpkgsums'])
+
+def post_build():
+    git_add_files('PKGBUILD')
+    git_commit()
diff --git a/phylonet/lilac.yaml b/phylonet/lilac.yaml
new file mode 100644
index 0000000000..b6b9a0b660
--- /dev/null
+++ b/phylonet/lilac.yaml
@@ -0,0 +1,8 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: github
+    github: NakhlehLab/PhyloNet
+    use_max_tag: true