r-*: use metadata checks for several packages

BioArchLinux/r-clipr/PKGBUILD

@@ -1,20 +1,21 @@
-# system requirements: xclip (https://github.com/astrand/xclip) or xsel(http://www.vergenet.net/~conrad/software/xsel/) for accessingthe X11 clipboard
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=clipr
 _pkgver=0.8.0
 pkgname=r-${_pkgname,,}
-pkgver=0.8.0
+pkgver=${_pkgver//-/.}
 pkgrel=8
-pkgdesc='Read and Write from the System Clipboard'
+pkgdesc="Read and Write from the System Clipboard"
-arch=('any')
+arch=(any)
-url="https://cran.r-project.org/package=${_pkgname}"
+url="https://cran.r-project.org/package=$_pkgname"
-license=('GPL')
+license=('GPL-3.0-only')
 depends=(
   r
-  xclip
 )
 optdepends=(
+  "wl-clipboard: accessing Wayland clipboard"
+  "xclip: accessing X11 clipboard"
+  "xsel: alternative for accessing X11 clipboard"
   r-covr
   r-knitr
   r-rmarkdown
@@ -22,14 +23,15 @@ optdepends=(
   r-testthat
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('32c2931992fbec9c31b71de3e27059f1cbb45b4b1f45fd42e0e8dbcec6de3be9')
+md5sums=('558ddf145114bbc0272e6aed05b8e5fe')
+b2sums=('6b489ff1b8353942a327a550eaf9f1f693d74809515990b4e9dc666d7829532d89f368aeb081413dfb7a1e4aeedbb247c570f3187310078ea8bbf264d9b0bb2d')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-clipr/lilac.py

@@ -1,12 +1,16 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(
-        if line.startswith('_pkgver='):
+        _G,
-            line = f'_pkgver={_G.newver}'
+        expect_systemrequirements = "xclip (https://github.com/astrand/xclip) or xsel (http://www.vergenet.net/~conrad/software/xsel/) for accessing the X11 clipboard, or wl-clipboard (https://github.com/bugaevc/wl-clipboard) for systems using Wayland.",
-        print(line)
+    )
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-clipr/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: clipr_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: clipr
-  url: https://cran.r-project.org/package=clipr
+  repo: cran
+  md5: true
 - alias: r

BioArchLinux/r-exactranktests/PKGBUILD

@@ -3,27 +3,25 @@
 _pkgname=exactRankTests
 _pkgver=0.8-35
 pkgname=r-${_pkgname,,}
-pkgver=0.8.35
+pkgver=${_pkgver//-/.}
 pkgrel=5
-pkgdesc='Exact Distributions for Rank and Permutation Tests'
+pkgdesc="Exact Distributions for Rank and Permutation Tests"
-arch=('x86_64')
+arch=(x86_64)
-url="https://cran.r-project.org/package=${_pkgname}"
+url="https://cran.r-project.org/package=$_pkgname"
-license=('GPL')
+license=('GPL-2.0-or-later')
 depends=(
   r
 )
-optdepends=(
-  r-survival
-)
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('7eb4a9ff431a306f634a5feba39c381afb17573e24230976ece843c84e8969e3')
+md5sums=('5c3767db5ff0c9d69b9990d4443f0cad')
+b2sums=('513d696cc55e2663ee8f722bc441c5ec5b0f7f9438ccaacd255e09bf40b93315cd6dd33054a433fbd7a3b29a01bac22a252dc956e57522c443763ba71f31c9a7')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-exactranktests/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(_G)
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-exactranktests/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: exactRankTests_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: exactRankTests
-  url: https://cran.r-project.org/package=exactRankTests
+  repo: cran
+  md5: true
 - alias: r

BioArchLinux/r-geem/PKGBUILD

@@ -3,12 +3,12 @@
 _pkgname=geeM
 _pkgver=0.10.1
 pkgname=r-${_pkgname,,}
-pkgver=0.10.1
+pkgver=${_pkgver//-/.}
 pkgrel=8
-pkgdesc='Solve Generalized Estimating Equations'
+pkgdesc="Solve Generalized Estimating Equations"
-arch=('any')
+arch=(any)
-url="https://cran.r-project.org/package=${_pkgname}"
+url="https://cran.r-project.org/package=$_pkgname"
-license=('GPL')
+license=('GPL-3.0-only')
 depends=(
   r
 )
@@ -18,14 +18,15 @@ optdepends=(
   r-testthat
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('fe76a32981b55835095041e777d1cf2e9ce43edb8d9488db56279f7cb6f43fe5')
+md5sums=('e493043dac3bd7c57b104ace2a6e19d7')
+b2sums=('584fc4ee474abf2c53b7aa6b6a0f602c636eac3fa9d9b87e797aaa69c1d905b535eb8094e6e91608968a4d0227d5249650c17c4e41cecd80957829dfdd52180d')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-geem/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(_G)
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-geem/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: geeM_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: geeM
-  url: https://cran.r-project.org/package=geeM
+  repo: cran
+  md5: true
 - alias: r

BioArchLinux/r-ismev/PKGBUILD

@@ -3,24 +3,25 @@
 _pkgname=ismev
 _pkgver=1.42
 pkgname=r-${_pkgname,,}
-pkgver=1.42
+pkgver=${_pkgver//-/.}
 pkgrel=6
-pkgdesc='An Introduction to Statistical Modeling of Extreme Values'
+pkgdesc="An Introduction to Statistical Modeling of Extreme Values"
-arch=('any')
+arch=(any)
-url="https://cran.r-project.org/package=${_pkgname}"
+url="https://cran.r-project.org/package=$_pkgname"
-license=('GPL')
+license=('GPL-2.0-or-later')
 depends=(
   r
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('0d57fbeca83bd478e84fcff795967d51d8448c629abe7adc6c4c18c7fb8bf1a5')
+md5sums=('35d6f5fa7f29eb822d4efad81b3dd59e')
+b2sums=('c87b907c13e55c16ecf71180fd66cf16ebce1cf225efa9139e30fa4953f275a18d8c33d02b5413cfc68ac1ef2ed8e9d09a29d5c81a60fc1989660a80cbb913f3')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-ismev/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(_G)
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-ismev/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: ismev_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: ismev
-  url: https://cran.r-project.org/package=ismev
+  repo: cran
+  md5: true
 - alias: r

BioArchLinux/r-log4r/PKGBUILD

@@ -3,12 +3,12 @@
 _pkgname=log4r
 _pkgver=0.4.3
 pkgname=r-${_pkgname,,}
-pkgver=0.4.3
+pkgver=${_pkgver//-/.}
 pkgrel=2
 pkgdesc="A Fast and Lightweight Logging System for R, Based on 'log4j'"
-arch=('x86_64')
+arch=(x86_64)
-url="https://cran.r-project.org/package=${_pkgname}"
+url="https://cran.r-project.org/package=$_pkgname"
-license=('Artistic2.0')
+license=('Artistic-2.0')
 depends=(
   r
 )
@@ -28,14 +28,15 @@ optdepends=(
   r-testthat
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('dfe3d49d35a8d8f3ad63f156d18e860540a01bd0af0e343cbab3e31a2cf5904c')
+md5sums=('48d5f4212c65e91cbd900c2fbaf2f3d6')
+b2sums=('2ba50dbe1312f564dba282afda0adf9ecbd1b7f4e2e7e9ddb2b1f12f398286c5523321d7686c0733831d19b0d05024f485f90d93b59cd721570c94a8891ee31e')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-log4r/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(_G)
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-log4r/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: log4r_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: log4r
-  url: https://cran.r-project.org/package=log4r
+  repo: cran
+  md5: true
 - alias: r

BioArchLinux/r-mcmc/PKGBUILD

@@ -3,11 +3,11 @@
 _pkgname=mcmc
 _pkgver=0.9-8
 pkgname=r-${_pkgname,,}
-pkgver=0.9.8
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Markov Chain Monte Carlo'
+pkgdesc="Markov Chain Monte Carlo"
-arch=('x86_64')
+arch=(x86_64)
-url="https://cran.r-project.org/package=${_pkgname}"
+url="https://cran.r-project.org/package=$_pkgname"
 license=('MIT')
 depends=(
   r
@@ -17,15 +17,18 @@ optdepends=(
   r-xtable
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('6a06440d4b58e8a7f122747d92046ff40da4bb58a20bf642228a648a0c826ea7')
+md5sums=('429599a7f24105629c41dd7c9f36b992')
+b2sums=('d804249a6244e3104687497c83472ec69411e05f3ce580d11b79b3a0278ed2c27d8b902ca6aa3d87f8da3ec169249ffb135ac99e4db17dc688e144e6b95912d7')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
-  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-mcmc/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(_G)
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-mcmc/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: mcmc_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: mcmc
-  url: https://cran.r-project.org/package=mcmc
+  repo: cran
+  md5: true
 - alias: r

BioArchLinux/r-mircompdata/PKGBUILD

@@ -3,24 +3,25 @@
 _pkgname=miRcompData
 _pkgver=1.32.0
 pkgname=r-${_pkgname,,}
-pkgver=1.32.0
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Data used in the miRcomp package'
+pkgdesc="Data used in the miRcomp package"
-arch=('any')
+arch=(any)
-url="https://bioconductor.org/packages/${_pkgname}"
+url="https://bioconductor.org/packages/$_pkgname"
-license=('GPL')
+license=('GPL-3.0-only')
 depends=(
   r
 )
 source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('e61d11cd0352745d221517f0f85654ad6e5923d2670eeff0069797db1bdd8897')
+md5sums=('0b091222ebe8ac1a3a2c59384931393b')
+b2sums=('1c41da4e325c58fd0d510c945e2c7fdb76d760557b79890ec5ffc5a967b4993b2a66b3b4f270314ee9848acc288a585ef2b87d1150dbc0c08a8c82a975bbb911')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-mircompdata/lilac.py

@@ -1,12 +1,16 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(
-        if line.startswith('_pkgver='):
+        _G,
-            line = f'_pkgver={_G.newver}'
+        expect_license = "GPL-3 | file LICENSE",
-        print(line)
+    )
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-mircompdata/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: miRcompData_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: miRcompData
-  url: https://bioconductor.org/packages/miRcompData
+  repo: bioc-data-experiment
+  md5: true
 - alias: r

BioArchLinux/r-smvar/PKGBUILD

@@ -3,24 +3,25 @@
 _pkgname=SMVar
 _pkgver=1.3.4
 pkgname=r-${_pkgname,,}
-pkgver=1.3.4
+pkgver=${_pkgver//-/.}
 pkgrel=7
-pkgdesc='Structural Model for variances'
+pkgdesc="Structural Model for Variances"
-arch=('any')
+arch=(any)
-url="https://cran.r-project.org/package=${_pkgname}"
+url="https://cran.r-project.org/package=$_pkgname"
-license=('GPL')
+license=('GPL-2.0-or-later')
 depends=(
   r
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('aaea3ef7da6cee1bb86fef166df766229c8b7cac9fcf5bc28da7adff5e2c01d6')
+md5sums=('0cad7d2abfd4be6306eaf2bce923ce7d')
+b2sums=('da5e76b6e6ecd9d2992943429056ee6956509e9414e15a537e640ecff7efe190029e5c6f726138fb325fac1ffec4fe1fc1d2c54f647d55fcedbacae4f46b912b')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-smvar/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(_G)
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-smvar/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: SMVar_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: SMVar
-  url: https://cran.r-project.org/package=SMVar
+  repo: cran
+  md5: true
 - alias: r

BioArchLinux/r-stabs/PKGBUILD

@@ -3,12 +3,12 @@
 _pkgname=stabs
 _pkgver=0.6-4
 pkgname=r-${_pkgname,,}
-pkgver=0.6.4
+pkgver=${_pkgver//-/.}
 pkgrel=8
-pkgdesc='Stability Selection with Error Control'
+pkgdesc="Stability Selection with Error Control"
-arch=('any')
+arch=(any)
-url="https://cran.r-project.org/package=${_pkgname}"
+url="https://cran.r-project.org/package=$_pkgname"
-license=('GPL')
+license=('GPL-2.0-only')
 depends=(
   r
 )
@@ -24,14 +24,15 @@ optdepends=(
   r-th.data
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('f8507337789f668e421a6ee7b11dd5ea331bf8bff0f9702dd1b93f46c2f3c1d9')
+md5sums=('b05e82dca362b6442b1c2d2970252509')
+b2sums=('4c29ed288d3386fe6293b9eeb11fb316879ecb6a1d1198e8fab711fd9b60f283072ea1c0b040d0cd67aa7d34222979a480ae13170b905855e0b72287e9f80108')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-stabs/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(_G)
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-stabs/lilac.yaml

@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: stabs_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: stabs
-  url: https://cran.r-project.org/package=stabs
+  repo: cran
+  md5: true
 - alias: r