add fail dir for some terrible upstream

fail/avogadro2libs/PKGBUILD

@@ -0,0 +1,47 @@
+# Maintainer: Eric Berquist <eric DOT berquist AT gmail DOT com>
+
+_pkgname=avogadrolibs
+pkgname=avogadro2libs
+pkgver=1.95.1
+pkgrel=2
+pkgdesc="Avogadro 2: libraries"
+url="http://openchemistry.org/projects/avogadro2"
+arch=("x86_64")
+license=("Kitware")
+depends=("libarchive" "glew" "hdf5" "vtk=8" "libmsym" "spglib" "libmmtf" "qt5-webview" "qt5-x11extras" "molequeue" "pybind11" "python-cclib")
+# gdal is for proj, which is optional for VTK but required here? same for openmpi
+# `msgpack-c` is a workaround for the broken libmmtf PKGBUILD
+makedepends=("make" "cmake" "eigen" "gtest" "gdal" "openmpi" "msgpack-c")
+conflicts=("${_pkgname}")
+provides=("${_pkgname}")
+source=("https://github.com/OpenChemistry/avogadrolibs/archive/refs/tags/${pkgver}.zip")
+sha256sums=('5b69fd1216e49fde04816e257fb60819c47bc711317827f2759a26295309ed5a')
+
+build() {
+  mkdir -p "${srcdir}"/build
+  cd "${srcdir}"/build
+  cmake \
+      -DCMAKE_BUILD_TYPE=Release \
+      -DCMAKE_INSTALL_PREFIX=/usr \
+      -DCMAKE_INSTALL_LIBDIR=lib \
+      -DBUILD_SHARED_LIBS=ON \
+      -DENABLE_TESTING=ON \
+      -DUSE_HDF5=ON \
+      -DUSE_VTK=ON \
+      -DUSE_MMTF=ON \
+      -DUSE_PYTHON=ON \
+      -DPYTHON_EXECUTABLE=/usr/bin/python \
+      "${srcdir}/${_pkgname}-${pkgver}"
+  make
+}
+
+check() {
+  cd "${srcdir}"/build
+  make test
+}
+
+package() {
+  cd "${srcdir}"/build
+  make DESTDIR="${pkgdir}" install
+  install -D -m 644 "${srcdir}/${pkgname}"/LICENSE "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}

fail/avogadro2libs/lilac.py

@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+    run_cmd(['updpkgsums'])
+
+def post_build():
+    git_add_files('PKGBUILD')
+    git_commit()

fail/avogadro2libs/lilac.yaml

@@ -0,0 +1,10 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: github
+    github: OpenChemistry/avogadrolibs
+    use_max_tag: true
+repo_depends:
+  -  python-cclib

fail/python-cclib/.gitignore

@@ -0,0 +1,8 @@
+# makepkg files
+pkg/
+src/
+*.xz
+
+# source files
+*.gz
+cclib/

fail/python-cclib/PKGBUILD

@@ -0,0 +1,24 @@
+# Maintainer: Eric Berquist <eric dot berquist at gmail dot com>
+
+_name="cclib"
+pkgname="python-${_name}"
+pkgver=1.6.2
+pkgrel=2
+pkgdesc="A library for parsing and interpreting the results of computational chemistry packages."
+arch=("any")
+url="http://cclib.github.io"
+license=("BSD-3-Clause")
+makedepends=("python-setuptools")
+depends=("python-numpy" "python-packaging" "python-periodictable")
+optdepends=('python-openbabel: for generating `OBMol`s of results'
+            'python-biopython: for generating `BioPython.Atom`s of parsed results'
+            'python-pandas: for generating DataFrames of parsed results'
+            'python-scipy: for calculating properties of nuclear configurations')
+source=("https://github.com/${_name}/${_name}/archive/v${pkgver}.tar.gz")
+sha256sums=('ece7b34a487f7483763ef997fa527b8a8c3e1963796df0a9dbf3bab85a686338')
+
+package() {
+  cd "${srcdir}/${_name}-${pkgver}"
+  python setup.py install --root="${pkgdir}" --optimize=1
+  install -D -m644 LICENSE "${pkgdir}"/usr/share/licenses/${pkgname}/LICENSE
+}

fail/python-cclib/lilac.py

@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+    run_cmd(['updpkgsums'])
+
+def post_build():
+    git_add_files('PKGBUILD')
+    git_commit()

fail/python-cclib/lilac.yaml

@@ -0,0 +1,11 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: github
+    github: cclib/cclib
+    use_latest_release: true
+    prefix: cclib-v
+repo_depends:
+  -  python-periodictable

fail/python-periodictable/PKGBUILD

@@ -0,0 +1,18 @@
+# Maintainer: Ross Whitfield <whitfieldre@ornl.gov>
+pkgname='python-periodictable'
+_pkgname='periodictable'
+pkgver=1.6.0
+pkgrel=1
+pkgdesc="Extensible periodic table of the elements"
+url="http://periodictable.readthedocs.org"
+arch=("any")
+license=('public domain')
+makedepends=('python-setuptools')
+source=("https://github.com/pkienzle/periodictable/archive/v$pkgver.tar.gz")
+md5sums=('7fe922ea0ed6b1c568ce3b1aa3d731ed')
+
+package() {
+    depends=('python-numpy' 'python-pyparsing')
+    cd "$srcdir/${_pkgname}-$pkgver"
+    python setup.py install --root="$pkgdir/" --optimize=1
+}

fail/python-periodictable/lilac.py

@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+    run_cmd(['updpkgsums'])
+
+def post_build():
+    git_add_files('PKGBUILD')
+    git_commit()

fail/python-periodictable/lilac.yaml

@@ -0,0 +1,9 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: github
+    github: pkienzle/periodictable
+    use_max_tag: true
+    prefix: 'v'

fail/vtk8/.shellcheckrc

@@ -0,0 +1,6 @@
+# allow unsafe `cd `
+disable=SC2164
+# allow unused variable (pkgname,pkgver etc.)
+disable=SC2034
+# allow uninitialized variable (srcdir,pkgdir)
+disable=SC2154

fail/vtk8/PKGBUILD

@@ -0,0 +1,150 @@
+#!/bin/hint/bash
+# Maintainer : bartus <arch-user-repoᘓbartus.33mail.com>
+
+# og.Maintainer: Evgeniy Alekseev <arcanis at archlinux dot org>
+# og.Maintainer: Bruno Pagani <archange at archlinux dot org>
+# Contributor: Ray Rashif <schiv at archlinux dot org>
+# Contributor: Andrzej Giniewicz <gginiu at gmail dot com>
+# Contributor: Thomas Dziedzic <gostrc at gmail>
+
+pkgname=vtk8
+pkgver=8.2.0
+pkgrel=21
+provides=(vtk=$pkgver)
+conflicts=(vtk)
+pkgdesc="A software system for 3D computer graphics, image processing, and visualization"
+arch=(x86_64)
+url="https://www.vtk.org/"
+license=(BSD)
+depends=(gcc-libs double-conversion)
+makedepends=(cmake boost doxygen ffmpeg gdal gnuplot
+             java-environment openmpi python-matplotlib qt5-base
+             qt5-tools qt5-webkit qt5-x11extras tk unixodbc wget
+             double-conversion eigen expat freetype2 glew hdf5
+             libjpeg jsoncpp libxml2 lz4 xz python-mpi4py netcdf
+             libogg pdal libpng libtheora libtiff zlib
+             sqlite)
+optdepends=('gnuplot: plotting tools'
+            'graphviz: drawing tools'
+            'java-runtime: java bindings'
+            'python: python bindings'
+            'python-mpi4py: OpenMPI python support'
+            'python-matplotlib: for Matplotlib rendering'
+            'openmpi: OpenMPI support'
+            'qt5-x11extras'
+            'qt5-webkit: WebKit support'
+            'tk: tcl bindings'
+            ffmpeg
+            gdal
+            glew
+            hdf5
+            jsoncpp
+            lz4
+            netcdf
+            pdal
+            sqlite
+            unixodbc)
+source=("${url}/files/release/${pkgver%.*}/VTK-${pkgver}.tar.gz"
+        "${url}/files/release/${pkgver%.*}/VTKData-${pkgver}.tar.gz"
+        "${url}/files/release/${pkgver%.*}/VTKLargeData-${pkgver}.tar.gz"
+        vtk-python-3.8.patch::"https://gitlab.kitware.com/vtk/vtk/merge_requests/5883.patch"
+        vtk-gcc10.patch::"https://gitlab.kitware.com/vtk/vtk/-/commit/a9079bdc.patch"
+        vtk-qt5.15.patch::"https://gitlab.kitware.com/vtk/vtk/-/commit/797f2869.patch"
+        vtk-freetype-2.10.3.patch)
+options=(staticlibs)
+sha512sums=('521bd4dabedbc24b0e80a314a34ecd7554b04af28a7973245e3a9cf99a09b995d1b8ac42305c8e53369f226a0a6da3cdb29105ba2c90b46492736ef717760286'
+            '517d0f6dfdb0c61f59df933f06d3a28c8a48ea684aaff311456213fe493e2a20128886144325fc4edfa376b2d375a2dae6c60ad6e3d5d2f4a7b0ac1d8545c87b'
+            '8a7ea3d5870b1e4ccb31c77b4c270d00208349da1b2938e957210db3ec1449b678c66edc2faee1d4514aca6d725f642abc91e10ab0c151f6743cad1c53485588'
+            '05a367dbb21c95f6e03e30c1c520357f60c54074d341b592de8161280c9b90e9e70c19f6b474921cc2f4d2ec17d08a2e76d7dc94c8cef111c72a241684a57b34'
+            'b62127f078686f24501bc3ba2954bdcec846e7d7d1bdaf5f1b9d47ff86881035b81d6e065472228d46521a6ecafbc113adf3a8b8a97ab01a70fe88f47a971d3d'
+            'ce4c8822ca4a18f0aa94991ea4df27b340e30ca38d8931cb2929c2226e8cb3a34b15c4ebe4fcb2fa5f940ab132ffe925fdef0236429face93a46d633f272c329'
+            '01df3947425b510f9c64e72ab2020b02f28141421ad29be94bf118cd7b56cc22702ae329db05bc336284d3edcf3b71d254de10a2784296c691447ee356c76683')
+
+prepare() {
+  cd VTK-${pkgver}
+
+  # Fix build with python 3.8
+  patch -p1 -i ../vtk-python-3.8.patch
+
+  # Fix build with GCC 10
+  patch -d ThirdParty/exodusII/vtkexodusII -p1 -i "$srcdir"/vtk-gcc10.patch
+  sed -e 's|REGEX MATCH \"\[3-9\]|REGEX MATCH \"[1-9][0-9]|' -i CMake/VTKGenerateExportHeader.cmake
+
+  # Fix build with Qt 5.15
+  patch -p1 -i ../vtk-qt5.15.patch
+
+  # Fix build with Java 12
+  sed -i 's/VTK_JAVA_SOURCE_VERSION "1.6"/VTK_JAVA_SOURCE_VERSION "1.7"/
+          s/VTK_JAVA_TARGET_VERSION "1.6"/VTK_JAVA_TARGET_VERSION "1.7"/' Wrapping/Java/CMakeLists.txt
+
+  # Fix build with FreeType 2.10.3
+  patch -p1 -i ../vtk-freetype-2.10.3.patch
+
+  # Fix build with HDF5 1.12.1
+  sed -i 's/typedef int hid_t;/typedef int64_t hid_t;/' ThirdParty/xdmf3/vtkxdmf3/core/XdmfHDF5Controller.hpp
+}
+
+build() {
+  # to help cmake find java
+  export JAVA_HOME=/usr/lib/jvm/default
+
+  # GL2PS blocked by http://www.vtk.org/Bug/view.php?id=16083
+  # LIBHARU blocked by https://github.com/libharu/libharu/pull/157
+  # exodusII,kissfft,verdict,VPIC,xdmf2/3,zfp not packaged in Arch
+  # Note: VTK explicitly disables system GLEW dependency, it uses embedded sources with modifications
+  local VTK_USE_SYSTEM_LIB=""
+  # Common with ParaView
+  for lib in DOUBLECONVERSION EIGEN EXPAT FREETYPE GLEW HDF5 JPEG JSONCPP LIBXML2 LZ4 LZMA MPI4PY NETCDF OGG PNG THEORA TIFF ZLIB; do
+    VTK_USE_SYSTEM_LIB+="-DVTK_USE_SYSTEM_${lib}=ON "
+  done
+  for lib in SQLITE; do
+    VTK_USE_SYSTEM_LIB+="-DVTK_USE_SYSTEM_${lib}=ON "
+  done
+
+  local _tkver=$(echo 'puts $tcl_version' | tclsh)
+
+  cmake -B build -S VTK-${pkgver} \
+    -DCMAKE_BUILD_TYPE=Release \
+    -DCMAKE_SKIP_RPATH=ON \
+    -DCMAKE_INSTALL_PREFIX=/usr \
+    -DCMAKE_INSTALL_LIBDIR=lib \
+    -DBUILD_SHARED_LIBS=ON \
+    -DBUILD_DOCUMENTATION=OFF \
+    -DDOXYGEN_KEEP_TEMP=ON \
+    -DDOCUMENTATION_HTML_HELP=OFF \
+    -DDOCUMENTATION_HTML_TARZ=OFF \
+    -DBUILD_EXAMPLES=ON \
+    -DXDMF_STATIC_AND_SHARED=OFF \
+    -DVTK_USE_FFMPEG_ENCODER=ON \
+    -DVTK_BUILD_ALL_MODULES=ON \
+    -DModule_vtkIOPDAL=ON \
+    -DVTK_USE_LARGE_DATA=ON \
+    -DVTK_QT_VERSION="5" \
+    -DVTK_WRAP_JAVA=ON \
+    -DVTK_WRAP_PYTHON=ON \
+    -DVTK_WRAP_TCL=ON \
+    -DCMAKE_CXX_FLAGS="-D__STDC_CONSTANT_MACROS" \
+    -DVTK_PYTHON_VERSION="3" \
+    -DVTK_CUSTOM_LIBRARY_SUFFIX="" \
+    -DVTK_INSTALL_INCLUDE_DIR=include/vtk \
+    -DVTK_INSTALL_TCL_DIR=/usr/lib/tcl"${_tkver}"/vtk/ \
+    "${VTK_USE_SYSTEM_LIB}" \
+    -Wno-dev
+  make -C build
+}
+
+package() {
+  make -C build DESTDIR="${pkgdir}" install
+
+  # Move the vtk.jar to the arch-specific location
+  install -dv "${pkgdir}"/usr/share/java/vtk
+  mv -v "${pkgdir}"/usr/lib/vtk.jar "${pkgdir}"/usr/share/java/vtk
+  rm -rf "${pkgdir}"/usr/lib/vtk-${pkgver%.*}/java
+
+  # Install license
+  install -Dm644 VTK-${pkgver}/Copyright.txt -t "${pkgdir}"/usr/share/licenses/${pkgname%8}/
+
+  # Fix path of QtDesigner plugin
+  install -dv "${pkgdir}"/usr/lib/qt
+  mv "${pkgdir}"/usr/plugins "${pkgdir}"/usr/lib/qt/plugins
+}

fail/vtk8/lilac.py

@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_pkgbuild_commit()

fail/vtk8/lilac.yaml

@@ -0,0 +1,8 @@
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+build_prefix: extra-x86_64
+update_on:
+  - source: regex
+    url: "https://vtk.org/download/"
+    regex: 'Previous Release \((\d+.\d+.\d+)\)'

fail/vtk8/vtk-freetype-2.10.3.patch

@@ -0,0 +1,18 @@
+diff --git a/ThirdParty/freetype/vtk_freetype.h.in b/ThirdParty/freetype/vtk_freetype.h.in
+index c3f6f4f3..fd525e55 100644
+--- a/ThirdParty/freetype/vtk_freetype.h.in
++++ b/ThirdParty/freetype/vtk_freetype.h.in
+@@ -20,6 +20,13 @@
+ 
+ #ifdef VTK_USE_SYSTEM_FREETYPE
+ # include <ft2build.h>
++#ifndef FT_CALLBACK_DEF
++#ifdef __cplusplus
++#define FT_CALLBACK_DEF( x )  extern "C"  x
++#else
++#define FT_CALLBACK_DEF( x )  static  x
++#endif
++#endif /* FT_CALLBACK_DEF */
+ #else
+ # include <vtkfreetype/include/ft2build.h>
+ #endif