r-robtt: fix compilation, use metadata checks

BioArchLinux/r-robtt/PKGBUILD

@@ -1,46 +1,64 @@
-# system requirements: GNU make
-# Maintainer: sukanka <su975853527@gmail.com>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: sukanka <su975853527@gmail.com>
 
 _pkgname=RoBTT
 _pkgver=1.2.0
 pkgname=r-${_pkgname,,}
-pkgver=${_pkgver//[:-]/.}
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Robust Bayesian T-Test'
-arch=('x86_64')
+pkgdesc="Robust Bayesian T-Test"
+arch=(x86_64)
 url="https://cran.r-project.org/package=${_pkgname}"
-license=('GPL')
+license=(GPL3)
 depends=(
-  r
   r-bayestools
-  r-bh
   r-bridgesampling
   r-ggplot2
   r-rcpp
-  r-rcppeigen
   r-rcppparallel
   r-rdpack
   r-rstan
   r-rstantools
+)
+makedepends=(
+  r-bh
+  r-rcppeigen
   r-stanheaders
 )
+checkdepends=(
+  r-testthat
+  r-vdiffr
+)
 optdepends=(
   r-covr
   r-knitr
-  r-parallel
   r-rmarkdown
   r-testthat
   r-vdiffr
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('0989bc4c3bac8e9dbda570a42c3ee3b7')
 sha256sums=('79db72dfdf2e5ba5e942daf575cc657fff46a49f8bac78c097c67dcbcdd7a910')
 
+prepare() {
+  # skip test that requires external files
+  sed -i '1a skip("Requires external files")' \
+      "$_pkgname/tests/testthat/test-4-diagnostics.R"
+}
+
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  # compilation needs a lot of memory
+  MAKEFLAGS+=" -j1"
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-robtt/lilac.py

@@ -0,0 +1,17 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(
+        _G,
+        expect_systemrequirements = "GNU make",
+    )
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-robtt/lilac.yaml

@@ -1,29 +1,25 @@
 build_prefix: extra-x86_64
 maintainers:
-- github: sukanka
-post_build_script: |
-  git_pkgbuild_commit()
-  update_aur_repo()
-pre_build_script: |
-  for line in edit_file('PKGBUILD'):
-    if line.startswith('_pkgver='):
-      line = f'_pkgver={_G.newver}'
-    print(line)
-  update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+- github: pekkarr
+  email: pekkarr@protonmail.com
 repo_depends:
 - r-bayestools
-- r-bh
 - r-bridgesampling
 - r-ggplot2
 - r-rcpp
-- r-rcppeigen
 - r-rcppparallel
 - r-rdpack
 - r-rstan
 - r-rstantools
+repo_makedepends:
+- r-bh
+- r-rcppeigen
 - r-stanheaders
+- r-testthat
+- r-vdiffr
 update_on:
-- regex: RoBTT_([\d._-]+).tar.gz
-  source: regex
-  url: https://cran.r-project.org/package=RoBTT
+- source: rpkgs
+  pkgname: RoBTT
+  repo: cran
+  md5: true
 - alias: r